JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SP4_chr7_21423083_21519822	0/0	t0012	3723	8	6	2	0	0	0	copy fasta	SP4	chr7	21423083	21519822
SP4_chr7_21423083_21519822	0/0	t0013	3727	7	5	2	0	0	0	copy fasta	SP4	chr7	21423083	21519822
SP4_chr7_21423083_21519822	0/0	t0014	3723	7	0	1	6	0	0	copy fasta	SP4	chr7	21423083	21519822
SP4_chr7_21423083_21519822	0/0	t0015	3723	6	5	1	0	0	0	copy fasta	SP4	chr7	21423083	21519822
SP4_chr7_21423083_21519822	0/0	t0016	3725	6	0	0	6	0	0	copy fasta	SP4	chr7	21423083	21519822
SP4_chr7_21423083_21519822	0/0	t0017	3726	6	0	1	5	0	0	copy fasta	SP4	chr7	21423083	21519822
SP4_chr7_21423083_21519822	0/0	t0018	3725	6	0	1	3	0	2	copy fasta	SP4	chr7	21423083	21519822
SP4_chr7_21423083_21519822	0/0	t0019	3723	4	2	1	1	0	0	copy fasta	SP4	chr7	21423083	21519822
SP4_chr7_21423083_21519822	0/0	t0020	3727	4	0	0	3	0	1	copy fasta	SP4	chr7	21423083	21519822
SP4_chr7_21423083_21519822	0/0	t0021	3731	3	0	0	3	0	0	copy fasta	SP4	chr7	21423083	21519822
SP4_chr7_21423083_21519822	0/0	t0022	3725	3	0	0	2	0	1	copy fasta	SP4	chr7	21423083	21519822
SP4_chr7_21423083_21519822	0/0	t0023	3725	3	2	1	0	0	0	copy fasta	SP4	chr7	21423083	21519822
SP4_chr7_21423083_21519822	0/0	t0024	3726	3	3	0	0	0	0	copy fasta	SP4	chr7	21423083	21519822
SP4_chr7_21423083_21519822	0/0	t0025	3725	3	3	0	0	0	0	copy fasta	SP4	chr7	21423083	21519822
SP4_chr7_21423083_21519822	0/0	t0026	3728	2	2	0	0	0	0	copy fasta	SP4	chr7	21423083	21519822
SP4_chr7_21423083_21519822	0/0	t0027	3725	2	0	0	2	0	0	copy fasta	SP4	chr7	21423083	21519822
SP4_chr7_21423083_21519822	0/0	t0028	3728	2	2	0	0	0	0	copy fasta	SP4	chr7	21423083	21519822
SP4_chr7_21423083_21519822	0/0	t0029	3727	2	0	0	2	0	0	copy fasta	SP4	chr7	21423083	21519822
SP4_chr7_21423083_21519822	0/0	t0030	3728	2	1	0	0	0	1	copy fasta	SP4	chr7	21423083	21519822
SP4_chr7_21423083_21519822	0/0	t0031	3724	2	2	0	0	0	0	copy fasta	SP4	chr7	21423083	21519822
SP4_chr7_21423083_21519822	0/1	t0032	3723	2	0	0	0	0	1	copy fasta	SP4	chr7	21423083	21519822
SP4_chr7_21423083_21519822	0/0	t0033	3725	1	0	0	1	0	0	copy fasta	SP4	chr7	21423083	21519822
SP4_chr7_21423083_21519822	0/0	t0034	3724	1	1	0	0	0	0	copy fasta	SP4	chr7	21423083	21519822
SP4_chr7_21423083_21519822	0/0	t0035	3724	1	0	0	1	0	0	copy fasta	SP4	chr7	21423083	21519822
SP4_chr7_21423083_21519822	0/0	t0036	3726	1	0	0	1	0	0	copy fasta	SP4	chr7	21423083	21519822
SP4_chr7_21423083_21519822	0/0	t0037	3725	1	0	1	0	0	0	copy fasta	SP4	chr7	21423083	21519822
SP4_chr7_21423083_21519822	0/0	t0038	3725	1	0	0	1	0	0	copy fasta	SP4	chr7	21423083	21519822
SP4_chr7_21423083_21519822	0/0	t0039	3727	1	0	0	1	0	0	copy fasta	SP4	chr7	21423083	21519822
SP4_chr7_21423083_21519822	0/0	t0040	3725	1	0	0	0	0	1	copy fasta	SP4	chr7	21423083	21519822
SP4_chr7_21423083_21519822	0/0	t0041	3730	1	0	0	1	0	0	copy fasta	SP4	chr7	21423083	21519822
SP4_chr7_21423083_21519822	0/0	t0042	3725	1	0	0	1	0	0	copy fasta	SP4	chr7	21423083	21519822
SP4_chr7_21423083_21519822	0/0	t0043	3726	1	0	0	0	1	0	copy fasta	SP4	chr7	21423083	21519822
SP4_chr7_21423083_21519822	0/0	t0044	3726	1	0	0	1	0	0	copy fasta	SP4	chr7	21423083	21519822
SP4_chr7_21423083_21519822	0/0	t0045	3727	1	0	0	1	0	0	copy fasta	SP4	chr7	21423083	21519822
SP4_chr7_21423083_21519822	0/0	t0046	3727	1	0	0	0	0	1	copy fasta	SP4	chr7	21423083	21519822
SP4_chr7_21423083_21519822	0/0	t0047	3726	1	0	0	1	0	0	copy fasta	SP4	chr7	21423083	21519822
SP4_chr7_21423083_21519822	0/0	t0048	3729	1	0	0	0	0	1	copy fasta	SP4	chr7	21423083	21519822
SP4_chr7_21423083_21519822	0/0	t0049	3724	1	1	0	0	0	0	copy fasta	SP4	chr7	21423083	21519822
SP4_chr7_21423083_21519822	0/0	t0050	3726	1	0	1	0	0	0	copy fasta	SP4	chr7	21423083	21519822
SP4_chr7_21423083_21519822	0/0	t0051	3726	1	1	0	0	0	0	copy fasta	SP4	chr7	21423083	21519822
SP4_chr7_21423083_21519822	0/0	t0052	3726	1	1	0	0	0	0	copy fasta	SP4	chr7	21423083	21519822
SP4_chr7_21423083_21519822	0/0	t0053	3723	1	1	0	0	0	0	copy fasta	SP4	chr7	21423083	21519822
SP4_chr7_21423083_21519822	0/0	t0054	3724	1	1	0	0	0	0	copy fasta	SP4	chr7	21423083	21519822
SP4_chr7_21423083_21519822	0/0	t0055	3725	1	0	1	0	0	0	copy fasta	SP4	chr7	21423083	21519822
SP4_chr7_21423083_21519822	0/0	t0056	3728	1	0	0	1	0	0	copy fasta	SP4	chr7	21423083	21519822
SP4_chr7_21423083_21519822	0/0	t0057	3727	1	0	0	0	0	1	copy fasta	SP4	chr7	21423083	21519822
SP4_chr7_21423083_21519822	0/0	t0058	3722	1	0	0	1	0	0	copy fasta	SP4	chr7	21423083	21519822
SP4_chr7_21423083_21519822	0/0	t0059	3723	1	0	0	0	1	0	copy fasta	SP4	chr7	21423083	21519822
SP4_chr7_21423083_21519822	0/0	t0060	3726	1	0	0	0	0	1	copy fasta	SP4	chr7	21423083	21519822
SP4_chr7_21423083_21519822	0/0	t0061	3726	1	1	0	0	0	0	copy fasta	SP4	chr7	21423083	21519822