JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SP4_chr7_21423083_21519822	0/0	t0062	3726	1	0	1	0	0	0	copy fasta	SP4	chr7	21423083	21519822
SP4_chr7_21423083_21519822	0/0	t0063	3722	1	0	1	0	0	0	copy fasta	SP4	chr7	21423083	21519822
SP5_chr2_170710337_170723078	0/1	t0001	851	273	72	52	105	12	31	copy fasta	SP5	chr2	170710337	170723078
SP5_chr2_170710337_170723078	1/0	t0002	851	126	15	28	62	6	14	copy fasta	SP5	chr2	170710337	170723078
SP5_chr2_170710337_170723078	0/0	t0003	851	37	0	0	35	0	2	copy fasta	SP5	chr2	170710337	170723078
SP5_chr2_170710337_170723078	0/0	t0004	834	6	6	0	0	0	0	copy fasta	SP5	chr2	170710337	170723078
SP5_chr2_170710337_170723078	0/0	t0005	851	4	4	0	0	0	0	copy fasta	SP5	chr2	170710337	170723078
SP5_chr2_170710337_170723078	0/0	t0006	851	2	1	0	0	0	1	copy fasta	SP5	chr2	170710337	170723078
SP5_chr2_170710337_170723078	0/0	t0007	851	2	2	0	0	0	0	copy fasta	SP5	chr2	170710337	170723078
SP5_chr2_170710337_170723078	0/0	t0008	851	1	0	1	0	0	0	copy fasta	SP5	chr2	170710337	170723078
SP5_chr2_170710337_170723078	0/0	t0009	851	1	0	1	0	0	0	copy fasta	SP5	chr2	170710337	170723078
SP6_chr17_47839908_47856163	1/0	t0001	2694	116	32	24	48	2	9	copy fasta	SP6	chr17	47839908	47856163
SP6_chr17_47839908_47856163	0/1	t0002	2694	116	4	18	78	3	12	copy fasta	SP6	chr17	47839908	47856163
SP6_chr17_47839908_47856163	0/0	t0003	2694	83	40	18	14	3	8	copy fasta	SP6	chr17	47839908	47856163
SP6_chr17_47839908_47856163	0/0	t0004	2694	35	7	15	1	5	7	copy fasta	SP6	chr17	47839908	47856163
SP6_chr17_47839908_47856163	0/0	t0005	2694	20	11	0	5	0	4	copy fasta	SP6	chr17	47839908	47856163
SP6_chr17_47839908_47856163	0/0	t0006	2694	6	0	0	6	0	0	copy fasta	SP6	chr17	47839908	47856163
SP6_chr17_47839908_47856163	0/0	t0007	2694	2	2	0	0	0	0	copy fasta	SP6	chr17	47839908	47856163
SP6_chr17_47839908_47856163	0/0	t0008	2694	2	0	0	0	2	0	copy fasta	SP6	chr17	47839908	47856163
SP6_chr17_47839908_47856163	0/0	t0009	2694	2	0	0	2	0	0	copy fasta	SP6	chr17	47839908	47856163
SP6_chr17_47839908_47856163	0/0	t0010	2694	1	0	0	1	0	0	copy fasta	SP6	chr17	47839908	47856163
SP6_chr17_47839908_47856163	0/0	t0011	2694	1	0	0	0	1	0	copy fasta	SP6	chr17	47839908	47856163
SP6_chr17_47839908_47856163	0/0	t0012	2694	1	0	1	0	0	0	copy fasta	SP6	chr17	47839908	47856163
SP6_chr17_47839908_47856163	0/0	t0013	2694	1	0	1	0	0	0	copy fasta	SP6	chr17	47839908	47856163
SP6_chr17_47839908_47856163	0/0	t0014	2694	1	0	0	0	0	1	copy fasta	SP6	chr17	47839908	47856163
SP6_chr17_47839908_47856163	0/0	t0015	2694	1	0	0	1	0	0	copy fasta	SP6	chr17	47839908	47856163
SP6_chr17_47839908_47856163	0/0	t0016	2694	1	0	1	0	0	0	copy fasta	SP6	chr17	47839908	47856163
SP6_chr17_47839908_47856163	0/0	t0017	2694	1	0	0	0	0	1	copy fasta	SP6	chr17	47839908	47856163
SP7_chr12_53321575_53341354	0/1	t0001	1833	340	69	65	155	12	38	copy fasta	SP7	chr12	53321575	53341354
SP7_chr12_53321575_53341354	1/0	t0002	1828	11	9	1	0	0	0	copy fasta	SP7	chr12	53321575	53341354
SP7_chr12_53321575_53341354	0/0	t0003	1833	4	2	2	0	0	0	copy fasta	SP7	chr12	53321575	53341354
SP7_chr12_53321575_53341354	0/0	t0004	1833	2	1	1	0	0	0	copy fasta	SP7	chr12	53321575	53341354
SP7_chr12_53321575_53341354	0/0	t0005	1833	2	0	0	0	0	2	copy fasta	SP7	chr12	53321575	53341354
SP7_chr12_53321575_53341354	0/0	t0006	1833	1	0	1	0	0	0	copy fasta	SP7	chr12	53321575	53341354
SP7_chr12_53321575_53341354	0/0	t0007	1833	1	0	0	1	0	0	copy fasta	SP7	chr12	53321575	53341354
SP7_chr12_53321575_53341354	0/0	t0008	1833	1	0	0	1	0	0	copy fasta	SP7	chr12	53321575	53341354
SP7_chr12_53321575_53341354	0/0	t0009	1833	1	1	0	0	0	0	copy fasta	SP7	chr12	53321575	53341354
SP7_chr12_53321575_53341354	0/0	t0010	1833	1	0	1	0	0	0	copy fasta	SP7	chr12	53321575	53341354
SP7_chr12_53321575_53341354	0/0	t0011	1828	1	1	0	0	0	0	copy fasta	SP7	chr12	53321575	53341354
SP7_chr12_53321575_53341354	0/0	t0012	1833	1	1	0	0	0	0	copy fasta	SP7	chr12	53321575	53341354
SP7_chr12_53321575_53341354	0/0	t0013	1833	1	1	0	0	0	0	copy fasta	SP7	chr12	53321575	53341354
SP7_chr12_53321575_53341354	0/0	t0014	1833	1	0	0	1	0	0	copy fasta	SP7	chr12	53321575	53341354
SP7_chr12_53321575_53341354	0/0	t0015	1833	1	1	0	0	0	0	copy fasta	SP7	chr12	53321575	53341354
SP7_chr12_53321575_53341354	0/0	t0016	1833	1	0	1	0	0	0	copy fasta	SP7	chr12	53321575	53341354
SP8_chr7_20777279_20791886	0/1	t0001	2113	236	66	49	82	13	25	copy fasta	SP8	chr7	20777279	20791886
SP8_chr7_20777279_20791886	0/0	t0002	2111	108	7	18	63	2	18	copy fasta	SP8	chr7	20777279	20791886
SP8_chr7_20777279_20791886	0/0	t0003	2114	12	12	0	0	0	0	copy fasta	SP8	chr7	20777279	20791886
SP8_chr7_20777279_20791886	0/0	t0004	2113	10	1	3	6	0	0	copy fasta	SP8	chr7	20777279	20791886
SP8_chr7_20777279_20791886	0/0	t0005	2111	8	0	3	2	1	2	copy fasta	SP8	chr7	20777279	20791886
SP8_chr7_20777279_20791886	0/0	t0006	2113	8	2	0	6	0	0	copy fasta	SP8	chr7	20777279	20791886