JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SP8_chr7_20777279_20791886	0/0	t0007	2113	4	0	0	4	0	0	copy fasta	SP8	chr7	20777279	20791886
SP8_chr7_20777279_20791886	0/0	t0008	2113	3	3	0	0	0	0	copy fasta	SP8	chr7	20777279	20791886
SP8_chr7_20777279_20791886	0/0	t0009	2113	3	0	0	3	0	0	copy fasta	SP8	chr7	20777279	20791886
SP8_chr7_20777279_20791886	0/0	t0010	2111	3	0	0	3	0	0	copy fasta	SP8	chr7	20777279	20791886
SP8_chr7_20777279_20791886	0/0	t0011	2113	2	2	0	0	0	0	copy fasta	SP8	chr7	20777279	20791886
SP8_chr7_20777279_20791886	0/0	t0012	2114	2	1	0	0	0	1	copy fasta	SP8	chr7	20777279	20791886
SP8_chr7_20777279_20791886	0/0	t0013	2111	2	1	0	1	0	0	copy fasta	SP8	chr7	20777279	20791886
SP8_chr7_20777279_20791886	0/0	t0014	2113	2	0	0	2	0	0	copy fasta	SP8	chr7	20777279	20791886
SP8_chr7_20777279_20791886	0/0	t0015	2113	2	0	0	2	0	0	copy fasta	SP8	chr7	20777279	20791886
SP8_chr7_20777279_20791886	0/0	t0016	2111	2	0	1	0	0	1	copy fasta	SP8	chr7	20777279	20791886
SP8_chr7_20777279_20791886	0/0	t0017	2113	1	0	1	0	0	0	copy fasta	SP8	chr7	20777279	20791886
SP8_chr7_20777279_20791886	1/0	t0018	2100	1	0	0	0	0	0	copy fasta	SP8	chr7	20777279	20791886
SP8_chr7_20777279_20791886	0/0	t0019	2113	1	0	0	1	0	0	copy fasta	SP8	chr7	20777279	20791886
SP8_chr7_20777279_20791886	0/0	t0020	2113	1	0	0	1	0	0	copy fasta	SP8	chr7	20777279	20791886
SP8_chr7_20777279_20791886	0/0	t0021	2113	1	1	0	0	0	0	copy fasta	SP8	chr7	20777279	20791886
SP8_chr7_20777279_20791886	0/0	t0022	2113	1	1	0	0	0	0	copy fasta	SP8	chr7	20777279	20791886
SP8_chr7_20777279_20791886	0/0	t0023	2113	1	0	0	0	0	1	copy fasta	SP8	chr7	20777279	20791886
SP8_chr7_20777279_20791886	0/0	t0024	2113	1	1	0	0	0	0	copy fasta	SP8	chr7	20777279	20791886
SP8_chr7_20777279_20791886	0/0	t0025	2113	1	0	1	0	0	0	copy fasta	SP8	chr7	20777279	20791886
SP9_chr2_174329954_174343500	1/1	t0001	1100	342	89	56	139	15	41	copy fasta	SP9	chr2	174329954	174343500
SP9_chr2_174329954_174343500	0/0	t0002	1100	17	0	0	17	0	0	copy fasta	SP9	chr2	174329954	174343500
SP9_chr2_174329954_174343500	0/0	t0003	1100	15	1	12	0	0	2	copy fasta	SP9	chr2	174329954	174343500
SP9_chr2_174329954_174343500	0/0	t0004	1100	13	3	1	6	0	3	copy fasta	SP9	chr2	174329954	174343500
SP9_chr2_174329954_174343500	0/0	t0005	1100	4	0	2	0	0	2	copy fasta	SP9	chr2	174329954	174343500
SP9_chr2_174329954_174343500	0/0	t0006	1100	4	0	3	0	0	1	copy fasta	SP9	chr2	174329954	174343500
SP9_chr2_174329954_174343500	0/0	t0007	1100	2	2	0	0	0	0	copy fasta	SP9	chr2	174329954	174343500
SP9_chr2_174329954_174343500	0/0	t0008	1100	1	0	0	0	0	1	copy fasta	SP9	chr2	174329954	174343500
SP9_chr2_174329954_174343500	0/0	t0009	1100	1	1	0	0	0	0	copy fasta	SP9	chr2	174329954	174343500
SP9_chr2_174329954_174343500	0/0	t0010	1100	1	0	0	1	0	0	copy fasta	SP9	chr2	174329954	174343500
SP9_chr2_174329954_174343500	0/0	t0011	1100	1	0	0	1	0	0	copy fasta	SP9	chr2	174329954	174343500
SP9_chr2_174329954_174343500	0/0	t0012	1100	1	1	0	0	0	0	copy fasta	SP9	chr2	174329954	174343500
SP9_chr2_174329954_174343500	0/0	t0013	1100	1	1	0	0	0	0	copy fasta	SP9	chr2	174329954	174343500
SP9_chr2_174329954_174343500	0/0	t0014	1100	1	0	0	0	1	0	copy fasta	SP9	chr2	174329954	174343500
SPA17_chr11_124668904_124702518	0/1	t0001	3149	135	9	41	58	5	21	copy fasta	SPA17	chr11	124668904	124702518
SPA17_chr11_124668904_124702518	0/0	t0002	3149	107	6	16	58	9	18	copy fasta	SPA17	chr11	124668904	124702518
SPA17_chr11_124668904_124702518	0/0	t0003	3148	19	2	0	17	0	0	copy fasta	SPA17	chr11	124668904	124702518
SPA17_chr11_124668904_124702518	0/0	t0004	3149	16	16	0	0	0	0	copy fasta	SPA17	chr11	124668904	124702518
SPA17_chr11_124668904_124702518	0/0	t0005	3149	15	15	0	0	0	0	copy fasta	SPA17	chr11	124668904	124702518
SPA17_chr11_124668904_124702518	0/0	t0006	3151	13	12	1	0	0	0	copy fasta	SPA17	chr11	124668904	124702518
SPA17_chr11_124668904_124702518	0/0	t0007	3155	8	8	0	0	0	0	copy fasta	SPA17	chr11	124668904	124702518
SPA17_chr11_124668904_124702518	0/0	t0008	3148	7	0	0	7	0	0	copy fasta	SPA17	chr11	124668904	124702518
SPA17_chr11_124668904_124702518	0/0	t0009	3153	7	7	0	0	0	0	copy fasta	SPA17	chr11	124668904	124702518
SPA17_chr11_124668904_124702518	0/0	t0010	3153	4	2	0	2	0	0	copy fasta	SPA17	chr11	124668904	124702518
SPA17_chr11_124668904_124702518	0/0	t0011	3149	4	4	0	0	0	0	copy fasta	SPA17	chr11	124668904	124702518
SPA17_chr11_124668904_124702518	0/0	t0012	3149	3	0	0	3	0	0	copy fasta	SPA17	chr11	124668904	124702518
SPA17_chr11_124668904_124702518	0/0	t0013	3151	3	0	1	2	0	0	copy fasta	SPA17	chr11	124668904	124702518
SPA17_chr11_124668904_124702518	0/0	t0014	3148	2	2	0	0	0	0	copy fasta	SPA17	chr11	124668904	124702518
SPA17_chr11_124668904_124702518	0/0	t0015	3150	2	0	0	2	0	0	copy fasta	SPA17	chr11	124668904	124702518
SPA17_chr11_124668904_124702518	0/0	t0016	3155	2	0	0	0	0	2	copy fasta	SPA17	chr11	124668904	124702518
SPA17_chr11_124668904_124702518	0/0	t0017	3150	1	0	0	1	0	0	copy fasta	SPA17	chr11	124668904	124702518