JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SPA17_chr11_124668904_124702518	0/0	t0018	3149	1	1	0	0	0	0	copy fasta	SPA17	chr11	124668904	124702518
SPA17_chr11_124668904_124702518	0/0	t0019	3149	1	1	0	0	0	0	copy fasta	SPA17	chr11	124668904	124702518
SPA17_chr11_124668904_124702518	0/0	t0020	3149	1	1	0	0	0	0	copy fasta	SPA17	chr11	124668904	124702518
SPA17_chr11_124668904_124702518	0/0	t0021	3149	1	0	0	1	0	0	copy fasta	SPA17	chr11	124668904	124702518
SPA17_chr11_124668904_124702518	0/0	t0022	3151	1	0	0	1	0	0	copy fasta	SPA17	chr11	124668904	124702518
SPA17_chr11_124668904_124702518	1/0	t0023	3149	1	0	0	0	0	0	copy fasta	SPA17	chr11	124668904	124702518
SPA17_chr11_124668904_124702518	0/0	t0024	3149	1	0	0	0	0	1	copy fasta	SPA17	chr11	124668904	124702518
SPA17_chr11_124668904_124702518	0/0	t0025	3149	1	0	1	0	0	0	copy fasta	SPA17	chr11	124668904	124702518
SPAAR_chr9_35904490_35916686	1/0	t0001	1378	257	24	53	149	12	18	copy fasta	SPAAR	chr9	35904490	35916686
SPAAR_chr9_35904490_35916686	0/1	t0002	1378	78	13	15	36	2	11	copy fasta	SPAAR	chr9	35904490	35916686
SPAAR_chr9_35904490_35916686	0/0	t0003	1378	44	28	5	6	0	5	copy fasta	SPAAR	chr9	35904490	35916686
SPAAR_chr9_35904490_35916686	0/0	t0004	1378	12	12	0	0	0	0	copy fasta	SPAAR	chr9	35904490	35916686
SPAAR_chr9_35904490_35916686	0/0	t0005	1378	6	6	0	0	0	0	copy fasta	SPAAR	chr9	35904490	35916686
SPAAR_chr9_35904490_35916686	0/0	t0006	1378	4	0	1	2	1	0	copy fasta	SPAAR	chr9	35904490	35916686
SPAAR_chr9_35904490_35916686	0/0	t0007	1378	3	3	0	0	0	0	copy fasta	SPAAR	chr9	35904490	35916686
SPAAR_chr9_35904490_35916686	0/0	t0008	1378	3	1	2	0	0	0	copy fasta	SPAAR	chr9	35904490	35916686
SPAAR_chr9_35904490_35916686	0/0	t0009	1378	3	0	2	0	1	0	copy fasta	SPAAR	chr9	35904490	35916686
SPAAR_chr9_35904490_35916686	0/0	t0010	1378	2	1	1	0	0	0	copy fasta	SPAAR	chr9	35904490	35916686
SPAAR_chr9_35904490_35916686	0/0	t0011	1378	2	2	0	0	0	0	copy fasta	SPAAR	chr9	35904490	35916686
SPAAR_chr9_35904490_35916686	0/0	t0012	1378	1	0	0	1	0	0	copy fasta	SPAAR	chr9	35904490	35916686
SPAAR_chr9_35904490_35916686	0/0	t0013	1431	1	0	0	1	0	0	copy fasta	SPAAR	chr9	35904490	35916686
SPAAR_chr9_35904490_35916686	0/0	t0014	1378	1	0	1	0	0	0	copy fasta	SPAAR	chr9	35904490	35916686
SPAAR_chr9_35904490_35916686	0/0	t0015	1378	1	1	0	0	0	0	copy fasta	SPAAR	chr9	35904490	35916686
SPAAR_chr9_35904490_35916686	0/0	t0016	1378	1	0	0	1	0	0	copy fasta	SPAAR	chr9	35904490	35916686
SPAAR_chr9_35904490_35916686	0/0	t0017	1378	1	1	0	0	0	0	copy fasta	SPAAR	chr9	35904490	35916686
SPACA1_chr6_88042841_88071838	1/1	t0001	569	324	83	60	129	16	34	copy fasta	SPACA1	chr6	88042841	88071838
SPACA1_chr6_88042841_88071838	0/0	t0002	569	3	3	0	0	0	0	copy fasta	SPACA1	chr6	88042841	88071838
SPACA1_chr6_88042841_88071838	0/0	t0003	569	1	0	0	1	0	0	copy fasta	SPACA1	chr6	88042841	88071838
SPACA3_chr17_32986847_33002877	1/1	t0001	192	420	87	76	192	13	50	copy fasta	SPACA3	chr17	32986847	33002877
SPACA3_chr17_32986847_33002877	0/0	t0002	195	49	6	10	30	3	0	copy fasta	SPACA3	chr17	32986847	33002877
SPACA3_chr17_32986847_33002877	0/0	t0003	192	1	1	0	0	0	0	copy fasta	SPACA3	chr17	32986847	33002877
SPACA4_chr19_48601742_48612714	0/0	t0001	599	385	90	79	155	14	47	copy fasta	SPACA4	chr19	48601742	48612714
SPACA4_chr19_48601742_48612714	0/0	t0002	599	2	0	0	2	0	0	copy fasta	SPACA4	chr19	48601742	48612714
SPACA4_chr19_48601742_48612714	0/0	t0003	599	1	1	0	0	0	0	copy fasta	SPACA4	chr19	48601742	48612714
SPACA4_chr19_48601742_48612714	0/0	t0004	599	1	0	0	1	0	0	copy fasta	SPACA4	chr19	48601742	48612714
SPACA4_chr19_48601742_48612714	0/0	t0005	599	1	0	0	0	0	1	copy fasta	SPACA4	chr19	48601742	48612714
SPACA4_chr19_48601742_48612714	0/0	t0006	599	1	0	1	0	0	0	copy fasta	SPACA4	chr19	48601742	48612714
SPACA4_chr19_48601742_48612714	0/0	t0007	599	1	1	0	0	0	0	copy fasta	SPACA4	chr19	48601742	48612714
SPACA5B_chrX_48125626_48137620	0/0	t0001	154	311	72	52	145	8	34	copy fasta	SPACA5B	chrX	48125626	48137620
SPACA5B_chrX_48125626_48137620	0/0	t0002	153	1	0	0	1	0	0	copy fasta	SPACA5B	chrX	48125626	48137620
SPACA5_chrX_48001988_48014733	0/0	t0001	904	267	64	48	115	9	31	copy fasta	SPACA5	chrX	48001988	48014733
SPACA5_chrX_48001988_48014733	0/0	t0002	904	15	12	3	0	0	0	copy fasta	SPACA5	chrX	48001988	48014733
SPACA5_chrX_48001988_48014733	0/0	t0003	904	5	0	1	0	2	2	copy fasta	SPACA5	chrX	48001988	48014733
SPACA5_chrX_48001988_48014733	0/0	t0004	904	4	0	0	4	0	0	copy fasta	SPACA5	chrX	48001988	48014733
SPACA5_chrX_48001988_48014733	0/0	t0005	904	1	0	0	0	0	1	copy fasta	SPACA5	chrX	48001988	48014733
SPACA6_chr19_51688330_51710190	1/1	t0001	265	415	94	79	180	16	44	copy fasta	SPACA6	chr19	51688330	51710190
SPACA6_chr19_51688330_51710190	0/0	t0002	265	1	0	1	0	0	0	copy fasta	SPACA6	chr19	51688330	51710190
SPACA7_chr13_112371355_112439689	0/1	t0001	172	295	85	56	115	12	26	copy fasta	SPACA7	chr13	112371355	112439689
SPACA7_chr13_112371355_112439689	0/0	t0002	172	94	5	12	65	2	10	copy fasta	SPACA7	chr13	112371355	112439689
SPACA7_chr13_112371355_112439689	0/0	t0003	172	1	1	0	0	0	0	copy fasta	SPACA7	chr13	112371355	112439689