JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SPACA7_chr13_112371355_112439689	0/0	t0004	172	1	1	0	0	0	0	copy fasta	SPACA7	chr13	112371355	112439689
SPACA9_chr9_132873898_132895030	0/1	t0001	1574	177	23	50	70	9	24	copy fasta	SPACA9	chr9	132873898	132895030
SPACA9_chr9_132873898_132895030	0/0	t0002	1575	108	19	6	69	4	10	copy fasta	SPACA9	chr9	132873898	132895030
SPACA9_chr9_132873898_132895030	1/0	t0003	1574	79	20	14	39	1	4	copy fasta	SPACA9	chr9	132873898	132895030
SPACA9_chr9_132873898_132895030	0/0	t0004	1574	24	13	7	0	2	2	copy fasta	SPACA9	chr9	132873898	132895030
SPACA9_chr9_132873898_132895030	0/0	t0005	1575	8	0	0	8	0	0	copy fasta	SPACA9	chr9	132873898	132895030
SPACA9_chr9_132873898_132895030	0/0	t0006	1574	8	7	1	0	0	0	copy fasta	SPACA9	chr9	132873898	132895030
SPACA9_chr9_132873898_132895030	0/0	t0007	1575	7	7	0	0	0	0	copy fasta	SPACA9	chr9	132873898	132895030
SPACA9_chr9_132873898_132895030	0/0	t0008	1574	5	5	0	0	0	0	copy fasta	SPACA9	chr9	132873898	132895030
SPACA9_chr9_132873898_132895030	0/0	t0009	1575	3	0	0	3	0	0	copy fasta	SPACA9	chr9	132873898	132895030
SPACA9_chr9_132873898_132895030	0/0	t0010	1574	2	0	2	0	0	0	copy fasta	SPACA9	chr9	132873898	132895030
SPACA9_chr9_132873898_132895030	0/0	t0011	1574	1	1	0	0	0	0	copy fasta	SPACA9	chr9	132873898	132895030
SPACA9_chr9_132873898_132895030	0/0	t0012	1574	1	1	0	0	0	0	copy fasta	SPACA9	chr9	132873898	132895030
SPACA9_chr9_132873898_132895030	0/0	t0013	1574	1	1	0	0	0	0	copy fasta	SPACA9	chr9	132873898	132895030
SPACA9_chr9_132873898_132895030	0/0	t0014	1574	1	0	0	0	0	1	copy fasta	SPACA9	chr9	132873898	132895030
SPACA9_chr9_132873898_132895030	0/0	t0015	1575	1	0	0	1	0	0	copy fasta	SPACA9	chr9	132873898	132895030
SPACA9_chr9_132873898_132895030	0/0	t0016	1574	1	0	0	1	0	0	copy fasta	SPACA9	chr9	132873898	132895030
SPACA9_chr9_132873898_132895030	0/0	t0017	1574	1	1	0	0	0	0	copy fasta	SPACA9	chr9	132873898	132895030
SPACA9_chr9_132873898_132895030	0/0	t0018	1574	1	0	0	0	0	1	copy fasta	SPACA9	chr9	132873898	132895030
SPACA9_chr9_132873898_132895030	0/0	t0019	1538	1	0	0	1	0	0	copy fasta	SPACA9	chr9	132873898	132895030
SPACDR_chr7_100451620_100469260	1/1	t0001	368	335	80	54	148	13	38	copy fasta	SPACDR	chr7	100451620	100469260
SPACDR_chr7_100451620_100469260	0/0	t0002	368	14	14	0	0	0	0	copy fasta	SPACDR	chr7	100451620	100469260
SPACDR_chr7_100451620_100469260	0/0	t0003	368	1	0	0	0	1	0	copy fasta	SPACDR	chr7	100451620	100469260
SPADH_chr10_122667850_122684494	1/1	t0001	479	186	21	40	97	5	21	copy fasta	SPADH	chr10	122667850	122684494
SPADH_chr10_122667850_122684494	0/0	t0002	479	128	35	29	39	7	18	copy fasta	SPADH	chr10	122667850	122684494
SPADH_chr10_122667850_122684494	0/0	t0003	479	62	23	6	31	0	2	copy fasta	SPADH	chr10	122667850	122684494
SPADH_chr10_122667850_122684494	0/0	t0004	479	36	13	3	19	0	1	copy fasta	SPADH	chr10	122667850	122684494
SPADH_chr10_122667850_122684494	0/0	t0005	479	1	1	0	0	0	0	copy fasta	SPADH	chr10	122667850	122684494
SPADH_chr10_122667850_122684494	0/0	t0006	479	1	1	0	0	0	0	copy fasta	SPADH	chr10	122667850	122684494
SPAG11A_chr8_7843008_7865943	1/0	t0001	150	105	24	22	46	6	6	copy fasta	SPAG11A	chr8	7843008	7865943
SPAG11A_chr8_7843008_7865943	0/0	t0002	150	25	6	4	9	4	2	copy fasta	SPAG11A	chr8	7843008	7865943
SPAG11A_chr8_7843008_7865943	0/0	t0003	150	1	0	0	1	0	0	copy fasta	SPAG11A	chr8	7843008	7865943
SPAG11B_chr8_7445603_7468542	0/1	t0001	150	190	32	30	101	8	18	copy fasta	SPAG11B	chr8	7445603	7468542
SPAG11B_chr8_7445603_7468542	0/0	t0002	150	11	2	4	5	0	0	copy fasta	SPAG11B	chr8	7445603	7468542
SPAG11B_chr8_7445603_7468542	0/0	t0003	150	4	0	0	0	0	4	copy fasta	SPAG11B	chr8	7445603	7468542
SPAG16_chr2_213279464_214415501	0/0	t0001	207	73	35	10	20	2	6	copy fasta	SPAG16	chr2	213279464	214415501
SPAG16_chr2_213279464_214415501	0/0	t0002	207	12	12	0	0	0	0	copy fasta	SPAG16	chr2	213279464	214415501
SPAG16_chr2_213279464_214415501	0/0	t0003	207	1	1	0	0	0	0	copy fasta	SPAG16	chr2	213279464	214415501
SPAG17_chr1_117948590_118190228	1/1	t0001	532	246	54	46	100	12	32	copy fasta	SPAG17	chr1	117948590	118190228
SPAG17_chr1_117948590_118190228	0/0	t0002	532	17	10	1	4	0	2	copy fasta	SPAG17	chr1	117948590	118190228
SPAG17_chr1_117948590_118190228	0/0	t0003	532	3	2	1	0	0	0	copy fasta	SPAG17	chr1	117948590	118190228
SPAG1_chr8_100153587_100246904	1/1	t0001	915	304	57	60	136	14	35	copy fasta	SPAG1	chr8	100153587	100246904
SPAG1_chr8_100153587_100246904	0/0	t0002	918	40	18	2	15	0	5	copy fasta	SPAG1	chr8	100153587	100246904
SPAG1_chr8_100153587_100246904	0/0	t0003	915	14	11	3	0	0	0	copy fasta	SPAG1	chr8	100153587	100246904
SPAG1_chr8_100153587_100246904	0/0	t0004	915	3	2	1	0	0	0	copy fasta	SPAG1	chr8	100153587	100246904
SPAG1_chr8_100153587_100246904	0/0	t0005	915	2	1	1	0	0	0	copy fasta	SPAG1	chr8	100153587	100246904
SPAG1_chr8_100153587_100246904	0/0	t0006	915	1	0	0	1	0	0	copy fasta	SPAG1	chr8	100153587	100246904
SPAG1_chr8_100153587_100246904	0/0	t0007	915	1	0	1	0	0	0	copy fasta	SPAG1	chr8	100153587	100246904
SPAG1_chr8_100153587_100246904	0/0	t0008	918	1	1	0	0	0	0	copy fasta	SPAG1	chr8	100153587	100246904
SPAG4_chr20_35610829_35626094	1/1	t0001	248	317	83	56	118	16	42	copy fasta	SPAG4	chr20	35610829	35626094