JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SPAG4_chr20_35610829_35626094	0/0	t0002	248	3	3	0	0	0	0	copy fasta	SPAG4	chr20	35610829	35626094
SPAG5_chr17_28572574_28604025	1/1	t0001	205	330	86	60	140	8	34	copy fasta	SPAG5	chr17	28572574	28604025
SPAG6_chr10_22340496_22422610	1/1	t0001	1039	98	49	21	12	6	8	copy fasta	SPAG6	chr10	22340496	22422610
SPAG6_chr10_22340496_22422610	0/0	t0002	1039	20	12	7	0	0	1	copy fasta	SPAG6	chr10	22340496	22422610
SPAG6_chr10_22340496_22422610	0/0	t0003	1039	11	9	2	0	0	0	copy fasta	SPAG6	chr10	22340496	22422610
SPAG6_chr10_22340496_22422610	0/0	t0004	1039	3	3	0	0	0	0	copy fasta	SPAG6	chr10	22340496	22422610
SPAG6_chr10_22340496_22422610	0/0	t0005	1039	3	2	1	0	0	0	copy fasta	SPAG6	chr10	22340496	22422610
SPAG6_chr10_22340496_22422610	0/0	t0006	1039	3	2	1	0	0	0	copy fasta	SPAG6	chr10	22340496	22422610
SPAG6_chr10_22340496_22422610	0/0	t0007	1039	2	0	0	2	0	0	copy fasta	SPAG6	chr10	22340496	22422610
SPAG6_chr10_22340496_22422610	0/0	t0008	1039	1	0	0	0	0	1	copy fasta	SPAG6	chr10	22340496	22422610
SPAG6_chr10_22340496_22422610	0/0	t0009	1039	1	1	0	0	0	0	copy fasta	SPAG6	chr10	22340496	22422610
SPAG7_chr17_4954226_4972817	1/1	t0001	322	332	75	57	157	11	30	copy fasta	SPAG7	chr17	4954226	4972817
SPAG7_chr17_4954226_4972817	0/0	t0002	324	63	0	12	37	4	10	copy fasta	SPAG7	chr17	4954226	4972817
SPAG7_chr17_4954226_4972817	0/0	t0003	320	17	1	1	14	1	0	copy fasta	SPAG7	chr17	4954226	4972817
SPAG7_chr17_4954226_4972817	0/0	t0004	322	11	11	0	0	0	0	copy fasta	SPAG7	chr17	4954226	4972817
SPAG7_chr17_4954226_4972817	0/0	t0005	322	1	1	0	0	0	0	copy fasta	SPAG7	chr17	4954226	4972817
SPAG8_chr9_35804795_35817262	1/1	t0001	259	418	90	76	200	12	38	copy fasta	SPAG8	chr9	35804795	35817262
SPAG8_chr9_35804795_35817262	0/0	t0002	259	1	1	0	0	0	0	copy fasta	SPAG8	chr9	35804795	35817262
SPAG8_chr9_35804795_35817262	0/0	t0003	259	1	1	0	0	0	0	copy fasta	SPAG8	chr9	35804795	35817262
SPAG9_chr17_50957174_51125868	0/1	t0001	4312	114	35	31	28	6	13	copy fasta	SPAG9	chr17	50957174	51125868
SPAG9_chr17_50957174_51125868	1/0	t0002	4311	73	18	10	33	6	5	copy fasta	SPAG9	chr17	50957174	51125868
SPAG9_chr17_50957174_51125868	0/0	t0003	4313	37	4	6	24	0	3	copy fasta	SPAG9	chr17	50957174	51125868
SPAG9_chr17_50957174_51125868	0/0	t0004	4313	14	3	7	1	2	1	copy fasta	SPAG9	chr17	50957174	51125868
SPAG9_chr17_50957174_51125868	0/0	t0005	4314	8	5	1	0	0	2	copy fasta	SPAG9	chr17	50957174	51125868
SPAG9_chr17_50957174_51125868	0/0	t0006	4311	7	0	4	0	0	3	copy fasta	SPAG9	chr17	50957174	51125868
SPAG9_chr17_50957174_51125868	0/0	t0007	4313	7	7	0	0	0	0	copy fasta	SPAG9	chr17	50957174	51125868
SPAG9_chr17_50957174_51125868	0/0	t0008	4313	5	4	1	0	0	0	copy fasta	SPAG9	chr17	50957174	51125868
SPAG9_chr17_50957174_51125868	0/0	t0009	4312	4	1	0	3	0	0	copy fasta	SPAG9	chr17	50957174	51125868
SPAG9_chr17_50957174_51125868	0/0	t0010	4313	3	3	0	0	0	0	copy fasta	SPAG9	chr17	50957174	51125868
SPAG9_chr17_50957174_51125868	0/0	t0011	4313	2	2	0	0	0	0	copy fasta	SPAG9	chr17	50957174	51125868
SPAG9_chr17_50957174_51125868	0/0	t0012	4313	2	0	0	2	0	0	copy fasta	SPAG9	chr17	50957174	51125868
SPAG9_chr17_50957174_51125868	0/0	t0013	4313	2	0	2	0	0	0	copy fasta	SPAG9	chr17	50957174	51125868
SPAG9_chr17_50957174_51125868	0/0	t0014	4311	1	0	1	0	0	0	copy fasta	SPAG9	chr17	50957174	51125868
SPAG9_chr17_50957174_51125868	0/0	t0015	4314	1	0	1	0	0	0	copy fasta	SPAG9	chr17	50957174	51125868
SPAG9_chr17_50957174_51125868	0/0	t0016	4314	1	1	0	0	0	0	copy fasta	SPAG9	chr17	50957174	51125868
SPAG9_chr17_50957174_51125868	0/0	t0017	4311	1	0	0	1	0	0	copy fasta	SPAG9	chr17	50957174	51125868
SPAG9_chr17_50957174_51125868	0/0	t0018	4311	1	1	0	0	0	0	copy fasta	SPAG9	chr17	50957174	51125868
SPAG9_chr17_50957174_51125868	0/0	t0019	4311	1	0	0	0	0	1	copy fasta	SPAG9	chr17	50957174	51125868
SPAG9_chr17_50957174_51125868	0/0	t0020	4311	1	0	0	1	0	0	copy fasta	SPAG9	chr17	50957174	51125868
SPAG9_chr17_50957174_51125868	0/0	t0021	4312	1	1	0	0	0	0	copy fasta	SPAG9	chr17	50957174	51125868
SPAG9_chr17_50957174_51125868	0/0	t0022	4312	1	1	0	0	0	0	copy fasta	SPAG9	chr17	50957174	51125868
SPAG9_chr17_50957174_51125868	0/0	t0023	4312	1	1	0	0	0	0	copy fasta	SPAG9	chr17	50957174	51125868
SPAG9_chr17_50957174_51125868	0/0	t0024	4313	1	1	0	0	0	0	copy fasta	SPAG9	chr17	50957174	51125868
SPAG9_chr17_50957174_51125868	0/0	t0025	4311	1	0	0	1	0	0	copy fasta	SPAG9	chr17	50957174	51125868
SPAG9_chr17_50957174_51125868	0/0	t0026	4311	1	1	0	0	0	0	copy fasta	SPAG9	chr17	50957174	51125868
SPAG9_chr17_50957174_51125868	0/0	t0027	4312	1	1	0	0	0	0	copy fasta	SPAG9	chr17	50957174	51125868
SPAM1_chr7_123920241_123965046	1/1	t0001	508	384	98	64	162	12	46	copy fasta	SPAM1	chr7	123920241	123965046
SPAM1_chr7_123920241_123965046	0/0	t0002	508	2	0	0	2	0	0	copy fasta	SPAM1	chr7	123920241	123965046
SPAM1_chr7_123920241_123965046	0/0	t0003	508	1	0	1	0	0	0	copy fasta	SPAM1	chr7	123920241	123965046
SPAM1_chr7_123920241_123965046	0/0	t0004	508	1	0	1	0	0	0	copy fasta	SPAM1	chr7	123920241	123965046