JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SPANXD_chrX_141692411_141703739	0/0	t0020	389	1	0	0	1	0	0	copy fasta	SPANXD	chrX	141692411	141703739
SPANXD_chrX_141692411_141703739	0/0	t0021	389	1	1	0	0	0	0	copy fasta	SPANXD	chrX	141692411	141703739
SPANXD_chrX_141692411_141703739	0/0	t0022	388	1	0	0	1	0	0	copy fasta	SPANXD	chrX	141692411	141703739
SPANXD_chrX_141692411_141703739	0/0	t0023	403	1	0	0	1	0	0	copy fasta	SPANXD	chrX	141692411	141703739
SPANXN1_chrX_145242503_145261208	0/1	t0001	479	250	30	57	124	12	26	copy fasta	SPANXN1	chrX	145242503	145261208
SPANXN1_chrX_145242503_145261208	0/0	t0002	479	26	2	2	16	0	6	copy fasta	SPANXN1	chrX	145242503	145261208
SPANXN1_chrX_145242503_145261208	0/0	t0003	479	18	17	1	0	0	0	copy fasta	SPANXN1	chrX	145242503	145261208
SPANXN1_chrX_145242503_145261208	0/0	t0004	479	16	14	1	1	0	0	copy fasta	SPANXN1	chrX	145242503	145261208
SPANXN1_chrX_145242503_145261208	1/0	t0005	479	8	0	3	1	1	2	copy fasta	SPANXN1	chrX	145242503	145261208
SPANXN1_chrX_145242503_145261208	0/0	t0006	479	5	5	0	0	0	0	copy fasta	SPANXN1	chrX	145242503	145261208
SPANXN1_chrX_145242503_145261208	0/0	t0007	479	3	3	0	0	0	0	copy fasta	SPANXN1	chrX	145242503	145261208
SPANXN1_chrX_145242503_145261208	0/0	t0008	440	2	1	1	0	0	0	copy fasta	SPANXN1	chrX	145242503	145261208
SPANXN1_chrX_145242503_145261208	0/0	t0009	479	1	0	0	1	0	0	copy fasta	SPANXN1	chrX	145242503	145261208
SPANXN1_chrX_145242503_145261208	0/0	t0010	479	1	1	0	0	0	0	copy fasta	SPANXN1	chrX	145242503	145261208
SPANXN1_chrX_145242503_145261208	0/0	t0011	479	1	1	0	0	0	0	copy fasta	SPANXN1	chrX	145242503	145261208
SPANXN1_chrX_145242503_145261208	0/0	t0012	518	1	0	1	0	0	0	copy fasta	SPANXN1	chrX	145242503	145261208
SPANXN1_chrX_145242503_145261208	0/0	t0013	635	1	1	0	0	0	0	copy fasta	SPANXN1	chrX	145242503	145261208
SPANXN1_chrX_145242503_145261208	0/0	t0014	422	1	1	0	0	0	0	copy fasta	SPANXN1	chrX	145242503	145261208
SPANXN2_chrX_143706955_143725752	1/1	t0001	165	336	78	56	156	10	34	copy fasta	SPANXN2	chrX	143706955	143725752
SPANXN3_chrX_143503735_143522475	1/1	t0001	165	348	76	65	160	13	32	copy fasta	SPANXN3	chrX	143503735	143522475
SPANXN3_chrX_143503735_143522475	0/0	t0002	166	1	0	0	1	0	0	copy fasta	SPANXN3	chrX	143503735	143522475
SPANXN4_chrX_143020928_143039311	1/0	t0001	153	216	41	39	102	9	24	copy fasta	SPANXN4	chrX	143020928	143039311
SPANXN4_chrX_143020928_143039311	0/1	t0002	153	126	38	21	54	4	8	copy fasta	SPANXN4	chrX	143020928	143039311
SPANXN4_chrX_143020928_143039311	0/0	t0003	154	1	1	0	0	0	0	copy fasta	SPANXN4	chrX	143020928	143039311
SPANXN5_chrX_52791144_52802427	1/1	t0001	424	265	51	36	140	11	25	copy fasta	SPANXN5	chrX	52791144	52802427
SPANXN5_chrX_52791144_52802427	0/0	t0002	424	24	21	3	0	0	0	copy fasta	SPANXN5	chrX	52791144	52802427
SPANXN5_chrX_52791144_52802427	0/0	t0003	424	6	1	4	0	0	1	copy fasta	SPANXN5	chrX	52791144	52802427
SPANXN5_chrX_52791144_52802427	0/0	t0004	424	4	4	0	0	0	0	copy fasta	SPANXN5	chrX	52791144	52802427
SPANXN5_chrX_52791144_52802427	0/0	t0005	424	3	3	0	0	0	0	copy fasta	SPANXN5	chrX	52791144	52802427
SPANXN5_chrX_52791144_52802427	0/0	t0006	424	1	0	1	0	0	0	copy fasta	SPANXN5	chrX	52791144	52802427
SPARCL1_chr4_87468335_87534376	1/1	t0001	784	215	38	36	110	13	16	copy fasta	SPARCL1	chr4	87468335	87534376
SPARCL1_chr4_87468335_87534376	0/0	t0002	784	123	44	13	48	3	15	copy fasta	SPARCL1	chr4	87468335	87534376
SPARCL1_chr4_87468335_87534376	0/0	t0003	772	40	7	8	22	1	2	copy fasta	SPARCL1	chr4	87468335	87534376
SPARCL1_chr4_87468335_87534376	0/0	t0004	784	5	4	1	0	0	0	copy fasta	SPARCL1	chr4	87468335	87534376
SPARCL1_chr4_87468335_87534376	0/0	t0005	784	3	3	0	0	0	0	copy fasta	SPARCL1	chr4	87468335	87534376
SPARCL1_chr4_87468335_87534376	0/0	t0006	772	3	2	0	0	0	1	copy fasta	SPARCL1	chr4	87468335	87534376
SPARCL1_chr4_87468335_87534376	0/0	t0007	772	1	0	0	0	1	0	copy fasta	SPARCL1	chr4	87468335	87534376
SPARC_chr5_151656096_151691915	1/0	t0001	2540	113	4	29	56	6	17	copy fasta	SPARC	chr5	151656096	151691915
SPARC_chr5_151656096_151691915	0/0	t0002	2543	102	4	15	71	1	11	copy fasta	SPARC	chr5	151656096	151691915
SPARC_chr5_151656096_151691915	0/0	t0003	2543	55	12	5	33	1	4	copy fasta	SPARC	chr5	151656096	151691915
SPARC_chr5_151656096_151691915	0/0	t0004	2543	49	10	7	24	4	4	copy fasta	SPARC	chr5	151656096	151691915
SPARC_chr5_151656096_151691915	0/0	t0005	2543	36	6	9	11	4	6	copy fasta	SPARC	chr5	151656096	151691915
SPARC_chr5_151656096_151691915	0/0	t0006	2541	30	26	4	0	0	0	copy fasta	SPARC	chr5	151656096	151691915
SPARC_chr5_151656096_151691915	0/0	t0007	2543	15	12	3	0	0	0	copy fasta	SPARC	chr5	151656096	151691915
SPARC_chr5_151656096_151691915	0/0	t0008	2543	7	0	0	5	0	2	copy fasta	SPARC	chr5	151656096	151691915
SPARC_chr5_151656096_151691915	0/0	t0009	2541	5	0	3	0	0	2	copy fasta	SPARC	chr5	151656096	151691915
SPARC_chr5_151656096_151691915	0/0	t0010	2541	5	4	1	0	0	0	copy fasta	SPARC	chr5	151656096	151691915
SPARC_chr5_151656096_151691915	0/0	t0011	2543	3	0	2	0	0	1	copy fasta	SPARC	chr5	151656096	151691915
SPARC_chr5_151656096_151691915	0/0	t0012	2543	3	3	0	0	0	0	copy fasta	SPARC	chr5	151656096	151691915
SPARC_chr5_151656096_151691915	0/0	t0013	2541	3	3	0	0	0	0	copy fasta	SPARC	chr5	151656096	151691915