Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
BICD1_chr12_32101847_32388633	0/0	t0033	6500	1	0	0	0	0	1	copy fasta	BICD1	chr12	32101847	32388633
BICD1_chr12_32101847_32388633	0/0	t0034	6500	1	1	0	0	0	0	copy fasta	BICD1	chr12	32101847	32388633
BICD1_chr12_32101847_32388633	0/0	t0035	6489	1	1	0	0	0	0	copy fasta	BICD1	chr12	32101847	32388633
BICD1_chr12_32101847_32388633	0/0	t0036	6489	1	0	0	0	1	0	copy fasta	BICD1	chr12	32101847	32388633
BICD1_chr12_32101847_32388633	0/0	t0037	6492	1	1	0	0	0	0	copy fasta	BICD1	chr12	32101847	32388633
BICD1_chr12_32101847_32388633	0/0	t0038	6492	1	1	0	0	0	0	copy fasta	BICD1	chr12	32101847	32388633
BICD1_chr12_32101847_32388633	0/0	t0039	6489	1	1	0	0	0	0	copy fasta	BICD1	chr12	32101847	32388633
BICD1_chr12_32101847_32388633	0/0	t0040	6482	1	1	0	0	0	0	copy fasta	BICD1	chr12	32101847	32388633
BICD1_chr12_32101847_32388633	0/0	t0041	6492	1	0	0	1	0	0	copy fasta	BICD1	chr12	32101847	32388633
BICD1_chr12_32101847_32388633	0/0	t0042	6492	1	0	1	0	0	0	copy fasta	BICD1	chr12	32101847	32388633
BICD1_chr12_32101847_32388633	0/0	t0043	6492	1	0	1	0	0	0	copy fasta	BICD1	chr12	32101847	32388633
BICD1_chr12_32101847_32388633	0/0	t0044	6492	1	0	0	0	0	1	copy fasta	BICD1	chr12	32101847	32388633
BICD1_chr12_32101847_32388633	0/0	t0045	6492	1	0	0	1	0	0	copy fasta	BICD1	chr12	32101847	32388633
BICD1_chr12_32101847_32388633	0/0	t0046	6492	1	1	0	0	0	0	copy fasta	BICD1	chr12	32101847	32388633
BICD1_chr12_32101847_32388633	0/0	t0047	6492	1	1	0	0	0	0	copy fasta	BICD1	chr12	32101847	32388633
BICD1_chr12_32101847_32388633	0/0	t0048	6492	1	0	0	0	0	1	copy fasta	BICD1	chr12	32101847	32388633
BICD1_chr12_32101847_32388633	0/0	t0049	6492	1	1	0	0	0	0	copy fasta	BICD1	chr12	32101847	32388633
BICD1_chr12_32101847_32388633	0/0	t0050	6482	1	1	0	0	0	0	copy fasta	BICD1	chr12	32101847	32388633
BICD1_chr12_32101847_32388633	0/0	t0051	6482	1	0	0	1	0	0	copy fasta	BICD1	chr12	32101847	32388633
BICD1_chr12_32101847_32388633	0/0	t0052	6502	1	0	0	1	0	0	copy fasta	BICD1	chr12	32101847	32388633
BICD1_chr12_32101847_32388633	0/0	t0053	6492	1	0	0	0	0	1	copy fasta	BICD1	chr12	32101847	32388633
BICD1_chr12_32101847_32388633	0/0	t0054	6492	1	0	0	0	0	1	copy fasta	BICD1	chr12	32101847	32388633
BICD1_chr12_32101847_32388633	0/0	t0055	6492	1	1	0	0	0	0	copy fasta	BICD1	chr12	32101847	32388633
BICD1_chr12_32101847_32388633	0/0	t0056	6492	1	0	0	0	0	1	copy fasta	BICD1	chr12	32101847	32388633
BICD1_chr12_32101847_32388633	0/0	t0057	6492	1	1	0	0	0	0	copy fasta	BICD1	chr12	32101847	32388633
BICD1_chr12_32101847_32388633	0/0	t0058	6492	1	0	1	0	0	0	copy fasta	BICD1	chr12	32101847	32388633
BICD1_chr12_32101847_32388633	0/0	t0059	6492	1	0	1	0	0	0	copy fasta	BICD1	chr12	32101847	32388633
BICD1_chr12_32101847_32388633	0/0	t0060	6492	1	0	1	0	0	0	copy fasta	BICD1	chr12	32101847	32388633
BICD1_chr12_32101847_32388633	0/0	t0061	6492	1	1	0	0	0	0	copy fasta	BICD1	chr12	32101847	32388633
BICD1_chr12_32101847_32388633	0/0	t0062	6492	1	0	0	1	0	0	copy fasta	BICD1	chr12	32101847	32388633
BICD2_chr9_92706363_92769833	1/0	t0001	3881	140	51	32	33	11	12	copy fasta	BICD2	chr9	92706363	92769833
BICD2_chr9_92706363_92769833	0/0	t0002	3887	49	0	13	35	0	1	copy fasta	BICD2	chr9	92706363	92769833
BICD2_chr9_92706363_92769833	0/0	t0003	3881	42	1	2	33	0	6	copy fasta	BICD2	chr9	92706363	92769833
BICD2_chr9_92706363_92769833	0/1	t0004	3884	41	2	1	29	3	5	copy fasta	BICD2	chr9	92706363	92769833
BICD2_chr9_92706363_92769833	0/0	t0005	3881	21	2	3	10	1	5	copy fasta	BICD2	chr9	92706363	92769833
BICD2_chr9_92706363_92769833	0/0	t0006	3881	7	1	3	0	0	3	copy fasta	BICD2	chr9	92706363	92769833
BICD2_chr9_92706363_92769833	0/0	t0007	3881	6	0	5	0	0	1	copy fasta	BICD2	chr9	92706363	92769833
BICD2_chr9_92706363_92769833	0/0	t0008	3890	5	0	0	5	0	0	copy fasta	BICD2	chr9	92706363	92769833
BICD2_chr9_92706363_92769833	0/0	t0009	3887	5	1	0	2	0	2	copy fasta	BICD2	chr9	92706363	92769833
BICD2_chr9_92706363_92769833	0/0	t0010	3881	4	4	0	0	0	0	copy fasta	BICD2	chr9	92706363	92769833
BICD2_chr9_92706363_92769833	0/0	t0011	3890	4	2	1	1	0	0	copy fasta	BICD2	chr9	92706363	92769833
BICD2_chr9_92706363_92769833	0/0	t0012	3884	4	0	0	4	0	0	copy fasta	BICD2	chr9	92706363	92769833
BICD2_chr9_92706363_92769833	0/0	t0013	3881	3	2	0	1	0	0	copy fasta	BICD2	chr9	92706363	92769833
BICD2_chr9_92706363_92769833	0/0	t0014	3881	3	3	0	0	0	0	copy fasta	BICD2	chr9	92706363	92769833
BICD2_chr9_92706363_92769833	0/0	t0015	3896	3	0	3	0	0	0	copy fasta	BICD2	chr9	92706363	92769833
BICD2_chr9_92706363_92769833	0/0	t0016	3881	2	0	0	0	2	0	copy fasta	BICD2	chr9	92706363	92769833
BICD2_chr9_92706363_92769833	0/0	t0017	3881	1	0	0	1	0	0	copy fasta	BICD2	chr9	92706363	92769833
BICD2_chr9_92706363_92769833	0/0	t0018	3881	1	1	0	0	0	0	copy fasta	BICD2	chr9	92706363	92769833
BICD2_chr9_92706363_92769833	0/0	t0019	3881	1	0	1	0	0	0	copy fasta	BICD2	chr9	92706363	92769833
BICD2_chr9_92706363_92769833	0/0	t0020	3881	1	0	1	0	0	0	copy fasta	BICD2	chr9	92706363	92769833