JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SPARC_chr5_151656096_151691915	0/0	t0014	2543	2	2	0	0	0	0	copy fasta	SPARC	chr5	151656096	151691915
SPARC_chr5_151656096_151691915	0/0	t0015	2540	1	0	0	0	0	1	copy fasta	SPARC	chr5	151656096	151691915
SPARC_chr5_151656096_151691915	0/0	t0016	2543	1	1	0	0	0	0	copy fasta	SPARC	chr5	151656096	151691915
SPARC_chr5_151656096_151691915	0/0	t0017	2543	1	1	0	0	0	0	copy fasta	SPARC	chr5	151656096	151691915
SPARC_chr5_151656096_151691915	0/0	t0018	2543	1	0	0	1	0	0	copy fasta	SPARC	chr5	151656096	151691915
SPARC_chr5_151656096_151691915	0/0	t0019	2543	1	0	0	1	0	0	copy fasta	SPARC	chr5	151656096	151691915
SPARC_chr5_151656096_151691915	0/1	t0020	2540	1	0	0	0	0	0	copy fasta	SPARC	chr5	151656096	151691915
SPARC_chr5_151656096_151691915	0/0	t0021	2543	1	1	0	0	0	0	copy fasta	SPARC	chr5	151656096	151691915
SPARC_chr5_151656096_151691915	0/0	t0022	2543	1	1	0	0	0	0	copy fasta	SPARC	chr5	151656096	151691915
SPARC_chr5_151656096_151691915	0/0	t0023	2543	1	1	0	0	0	0	copy fasta	SPARC	chr5	151656096	151691915
SPARC_chr5_151656096_151691915	0/0	t0024	2543	1	1	0	0	0	0	copy fasta	SPARC	chr5	151656096	151691915
SPARC_chr5_151656096_151691915	0/0	t0025	2540	1	0	1	0	0	0	copy fasta	SPARC	chr5	151656096	151691915
SPARC_chr5_151656096_151691915	0/0	t0026	2543	1	1	0	0	0	0	copy fasta	SPARC	chr5	151656096	151691915
SPARC_chr5_151656096_151691915	0/0	t0027	2543	1	0	1	0	0	0	copy fasta	SPARC	chr5	151656096	151691915
SPARC_chr5_151656096_151691915	0/0	t0028	2543	1	1	0	0	0	0	copy fasta	SPARC	chr5	151656096	151691915
SPART_chr13_36296638_36351394	0/0	t0001	2900	182	59	30	64	5	24	copy fasta	SPART	chr13	36296638	36351394
SPART_chr13_36296638_36351394	0/0	t0002	2896	106	5	23	64	4	10	copy fasta	SPART	chr13	36296638	36351394
SPART_chr13_36296638_36351394	0/1	t0003	2900	48	2	12	23	3	7	copy fasta	SPART	chr13	36296638	36351394
SPART_chr13_36296638_36351394	1/0	t0004	2900	7	5	1	0	0	0	copy fasta	SPART	chr13	36296638	36351394
SPART_chr13_36296638_36351394	0/0	t0005	2899	5	5	0	0	0	0	copy fasta	SPART	chr13	36296638	36351394
SPART_chr13_36296638_36351394	0/0	t0006	2900	3	3	0	0	0	0	copy fasta	SPART	chr13	36296638	36351394
SPART_chr13_36296638_36351394	0/0	t0007	2900	3	0	2	0	1	0	copy fasta	SPART	chr13	36296638	36351394
SPART_chr13_36296638_36351394	0/0	t0008	2899	3	3	0	0	0	0	copy fasta	SPART	chr13	36296638	36351394
SPART_chr13_36296638_36351394	0/0	t0009	2900	2	1	1	0	0	0	copy fasta	SPART	chr13	36296638	36351394
SPART_chr13_36296638_36351394	0/0	t0010	2896	1	0	0	1	0	0	copy fasta	SPART	chr13	36296638	36351394
SPART_chr13_36296638_36351394	0/0	t0011	2900	1	0	0	0	1	0	copy fasta	SPART	chr13	36296638	36351394
SPART_chr13_36296638_36351394	0/0	t0012	2896	1	0	1	0	0	0	copy fasta	SPART	chr13	36296638	36351394
SPART_chr13_36296638_36351394	0/0	t0013	2896	1	1	0	0	0	0	copy fasta	SPART	chr13	36296638	36351394
SPART_chr13_36296638_36351394	0/0	t0014	2896	1	0	1	0	0	0	copy fasta	SPART	chr13	36296638	36351394
SPART_chr13_36296638_36351394	0/0	t0015	2900	1	1	0	0	0	0	copy fasta	SPART	chr13	36296638	36351394
SPART_chr13_36296638_36351394	0/0	t0016	2900	1	0	0	1	0	0	copy fasta	SPART	chr13	36296638	36351394
SPART_chr13_36296638_36351394	0/0	t0017	2900	1	1	0	0	0	0	copy fasta	SPART	chr13	36296638	36351394
SPART_chr13_36296638_36351394	0/0	t0018	2900	1	1	0	0	0	0	copy fasta	SPART	chr13	36296638	36351394
SPART_chr13_36296638_36351394	0/0	t0019	2911	1	0	0	1	0	0	copy fasta	SPART	chr13	36296638	36351394
SPART_chr13_36296638_36351394	0/0	t0020	2900	1	0	0	0	0	1	copy fasta	SPART	chr13	36296638	36351394
SPART_chr13_36296638_36351394	0/0	t0021	2900	1	1	0	0	0	0	copy fasta	SPART	chr13	36296638	36351394
SPART_chr13_36296638_36351394	0/0	t0022	2900	1	0	1	0	0	0	copy fasta	SPART	chr13	36296638	36351394
SPART_chr13_36296638_36351394	0/0	t0023	2899	1	1	0	0	0	0	copy fasta	SPART	chr13	36296638	36351394
SPART_chr13_36296638_36351394	0/0	t0024	2900	1	0	0	1	0	0	copy fasta	SPART	chr13	36296638	36351394
SPART_chr13_36296638_36351394	0/0	t0025	2900	1	0	1	0	0	0	copy fasta	SPART	chr13	36296638	36351394
SPART_chr13_36296638_36351394	0/0	t0026	2896	1	0	1	0	0	0	copy fasta	SPART	chr13	36296638	36351394
SPART_chr13_36296638_36351394	0/0	t0027	2896	1	1	0	0	0	0	copy fasta	SPART	chr13	36296638	36351394
SPART_chr13_36296638_36351394	0/0	t0028	2900	1	0	0	1	0	0	copy fasta	SPART	chr13	36296638	36351394
SPAST_chr2_32058556_32162637	0/0	t0001	3421	107	16	15	63	4	9	copy fasta	SPAST	chr2	32058556	32162637
SPAST_chr2_32058556_32162637	0/0	t0002	3421	91	19	20	41	4	7	copy fasta	SPAST	chr2	32058556	32162637
SPAST_chr2_32058556_32162637	0/1	t0003	3421	53	12	5	25	1	9	copy fasta	SPAST	chr2	32058556	32162637
SPAST_chr2_32058556_32162637	0/0	t0004	3421	36	12	17	1	3	3	copy fasta	SPAST	chr2	32058556	32162637
SPAST_chr2_32058556_32162637	1/0	t0005	3418	7	6	0	0	0	0	copy fasta	SPAST	chr2	32058556	32162637
SPAST_chr2_32058556_32162637	0/0	t0006	3421	7	7	0	0	0	0	copy fasta	SPAST	chr2	32058556	32162637
SPAST_chr2_32058556_32162637	0/0	t0007	3422	6	0	3	3	0	0	copy fasta	SPAST	chr2	32058556	32162637