JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SPAST_chr2_32058556_32162637	0/0	t0008	3418	4	4	0	0	0	0	copy fasta	SPAST	chr2	32058556	32162637
SPAST_chr2_32058556_32162637	0/0	t0009	3417	3	3	0	0	0	0	copy fasta	SPAST	chr2	32058556	32162637
SPAST_chr2_32058556_32162637	0/0	t0010	3422	3	1	0	2	0	0	copy fasta	SPAST	chr2	32058556	32162637
SPAST_chr2_32058556_32162637	0/0	t0011	3421	3	2	1	0	0	0	copy fasta	SPAST	chr2	32058556	32162637
SPAST_chr2_32058556_32162637	0/0	t0012	3421	3	0	3	0	0	0	copy fasta	SPAST	chr2	32058556	32162637
SPAST_chr2_32058556_32162637	0/0	t0013	3421	3	3	0	0	0	0	copy fasta	SPAST	chr2	32058556	32162637
SPAST_chr2_32058556_32162637	0/0	t0014	3421	2	1	1	0	0	0	copy fasta	SPAST	chr2	32058556	32162637
SPAST_chr2_32058556_32162637	0/0	t0015	3421	2	0	2	0	0	0	copy fasta	SPAST	chr2	32058556	32162637
SPAST_chr2_32058556_32162637	0/0	t0016	3421	1	0	0	1	0	0	copy fasta	SPAST	chr2	32058556	32162637
SPAST_chr2_32058556_32162637	0/0	t0017	3421	1	0	0	1	0	0	copy fasta	SPAST	chr2	32058556	32162637
SPAST_chr2_32058556_32162637	0/0	t0018	3421	1	0	1	0	0	0	copy fasta	SPAST	chr2	32058556	32162637
SPAST_chr2_32058556_32162637	0/0	t0019	3421	1	0	0	1	0	0	copy fasta	SPAST	chr2	32058556	32162637
SPAST_chr2_32058556_32162637	0/0	t0020	3421	1	0	0	1	0	0	copy fasta	SPAST	chr2	32058556	32162637
SPAST_chr2_32058556_32162637	0/0	t0021	3421	1	0	1	0	0	0	copy fasta	SPAST	chr2	32058556	32162637
SPAST_chr2_32058556_32162637	0/0	t0022	3421	1	0	0	1	0	0	copy fasta	SPAST	chr2	32058556	32162637
SPAST_chr2_32058556_32162637	0/0	t0023	3421	1	0	0	1	0	0	copy fasta	SPAST	chr2	32058556	32162637
SPAST_chr2_32058556_32162637	0/0	t0024	3421	1	0	0	0	0	1	copy fasta	SPAST	chr2	32058556	32162637
SPAST_chr2_32058556_32162637	0/0	t0025	3421	1	0	1	0	0	0	copy fasta	SPAST	chr2	32058556	32162637
SPAST_chr2_32058556_32162637	0/0	t0026	3421	1	0	0	1	0	0	copy fasta	SPAST	chr2	32058556	32162637
SPAST_chr2_32058556_32162637	0/0	t0027	3421	1	0	0	0	0	1	copy fasta	SPAST	chr2	32058556	32162637
SPATA12_chr3_57055664_57080432	1/1	t0001	1618	182	59	42	36	14	29	copy fasta	SPATA12	chr3	57055664	57080432
SPATA12_chr3_57055664_57080432	0/0	t0002	1618	102	2	1	96	0	3	copy fasta	SPATA12	chr3	57055664	57080432
SPATA12_chr3_57055664_57080432	0/0	t0003	1618	101	5	25	60	0	11	copy fasta	SPATA12	chr3	57055664	57080432
SPATA12_chr3_57055664_57080432	0/0	t0004	1618	19	18	1	0	0	0	copy fasta	SPATA12	chr3	57055664	57080432
SPATA12_chr3_57055664_57080432	0/0	t0005	1618	6	0	3	1	1	1	copy fasta	SPATA12	chr3	57055664	57080432
SPATA12_chr3_57055664_57080432	0/0	t0006	1618	5	4	1	0	0	0	copy fasta	SPATA12	chr3	57055664	57080432
SPATA12_chr3_57055664_57080432	0/0	t0007	1618	5	0	0	1	0	4	copy fasta	SPATA12	chr3	57055664	57080432
SPATA12_chr3_57055664_57080432	0/0	t0008	1618	3	0	0	3	0	0	copy fasta	SPATA12	chr3	57055664	57080432
SPATA12_chr3_57055664_57080432	0/0	t0009	1618	3	3	0	0	0	0	copy fasta	SPATA12	chr3	57055664	57080432
SPATA12_chr3_57055664_57080432	0/0	t0010	1618	2	0	1	0	1	0	copy fasta	SPATA12	chr3	57055664	57080432
SPATA12_chr3_57055664_57080432	0/0	t0011	1618	2	2	0	0	0	0	copy fasta	SPATA12	chr3	57055664	57080432
SPATA12_chr3_57055664_57080432	0/0	t0012	1618	1	0	0	1	0	0	copy fasta	SPATA12	chr3	57055664	57080432
SPATA12_chr3_57055664_57080432	0/0	t0013	1618	1	1	0	0	0	0	copy fasta	SPATA12	chr3	57055664	57080432
SPATA12_chr3_57055664_57080432	0/0	t0014	1618	1	1	0	0	0	0	copy fasta	SPATA12	chr3	57055664	57080432
SPATA12_chr3_57055664_57080432	0/0	t0015	1618	1	0	0	1	0	0	copy fasta	SPATA12	chr3	57055664	57080432
SPATA12_chr3_57055664_57080432	0/0	t0016	1618	1	0	1	0	0	0	copy fasta	SPATA12	chr3	57055664	57080432
SPATA12_chr3_57055664_57080432	0/0	t0017	1618	1	0	1	0	0	0	copy fasta	SPATA12	chr3	57055664	57080432
SPATA12_chr3_57055664_57080432	0/0	t0018	1618	1	1	0	0	0	0	copy fasta	SPATA12	chr3	57055664	57080432
SPATA12_chr3_57055664_57080432	0/0	t0019	1618	1	1	0	0	0	0	copy fasta	SPATA12	chr3	57055664	57080432
SPATA12_chr3_57055664_57080432	0/0	t0020	1618	1	1	0	0	0	0	copy fasta	SPATA12	chr3	57055664	57080432
SPATA12_chr3_57055664_57080432	0/0	t0021	1618	1	0	0	1	0	0	copy fasta	SPATA12	chr3	57055664	57080432
SPATA13_chr13_24155720_24312069	0/0	t0001	4621	24	0	5	17	0	2	copy fasta	SPATA13	chr13	24155720	24312069
SPATA13_chr13_24155720_24312069	0/0	t0002	4621	16	1	8	3	1	3	copy fasta	SPATA13	chr13	24155720	24312069
SPATA13_chr13_24155720_24312069	0/0	t0003	4621	15	3	1	8	2	1	copy fasta	SPATA13	chr13	24155720	24312069
SPATA13_chr13_24155720_24312069	0/0	t0004	4621	14	1	4	7	0	2	copy fasta	SPATA13	chr13	24155720	24312069
SPATA13_chr13_24155720_24312069	0/0	t0005	4621	13	0	3	7	2	1	copy fasta	SPATA13	chr13	24155720	24312069
SPATA13_chr13_24155720_24312069	0/0	t0006	4621	13	2	6	3	0	2	copy fasta	SPATA13	chr13	24155720	24312069
SPATA13_chr13_24155720_24312069	0/0	t0007	4621	11	0	1	9	0	1	copy fasta	SPATA13	chr13	24155720	24312069
SPATA13_chr13_24155720_24312069	0/0	t0008	4621	11	0	1	6	1	3	copy fasta	SPATA13	chr13	24155720	24312069
SPATA13_chr13_24155720_24312069	0/0	t0009	4621	11	0	1	10	0	0	copy fasta	SPATA13	chr13	24155720	24312069