JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SPATA13_chr13_24155720_24312069	0/0	t0010	4621	10	0	2	8	0	0	copy fasta	SPATA13	chr13	24155720	24312069
SPATA13_chr13_24155720_24312069	0/0	t0011	4621	9	0	2	6	0	1	copy fasta	SPATA13	chr13	24155720	24312069
SPATA13_chr13_24155720_24312069	0/0	t0012	4621	7	0	1	5	0	1	copy fasta	SPATA13	chr13	24155720	24312069
SPATA13_chr13_24155720_24312069	0/1	t0013	4621	6	1	0	2	0	2	copy fasta	SPATA13	chr13	24155720	24312069
SPATA13_chr13_24155720_24312069	0/0	t0014	4621	6	0	1	5	0	0	copy fasta	SPATA13	chr13	24155720	24312069
SPATA13_chr13_24155720_24312069	0/0	t0015	4621	5	4	0	0	1	0	copy fasta	SPATA13	chr13	24155720	24312069
SPATA13_chr13_24155720_24312069	0/0	t0016	4621	5	2	2	0	1	0	copy fasta	SPATA13	chr13	24155720	24312069
SPATA13_chr13_24155720_24312069	0/0	t0017	4620	5	0	0	5	0	0	copy fasta	SPATA13	chr13	24155720	24312069
SPATA13_chr13_24155720_24312069	0/0	t0018	4621	5	2	1	2	0	0	copy fasta	SPATA13	chr13	24155720	24312069
SPATA13_chr13_24155720_24312069	0/0	t0019	4620	4	0	1	1	1	1	copy fasta	SPATA13	chr13	24155720	24312069
SPATA13_chr13_24155720_24312069	0/0	t0020	4620	4	0	0	4	0	0	copy fasta	SPATA13	chr13	24155720	24312069
SPATA13_chr13_24155720_24312069	0/0	t0021	4621	4	4	0	0	0	0	copy fasta	SPATA13	chr13	24155720	24312069
SPATA13_chr13_24155720_24312069	0/0	t0022	4620	4	0	0	4	0	0	copy fasta	SPATA13	chr13	24155720	24312069
SPATA13_chr13_24155720_24312069	0/0	t0023	4621	4	0	3	0	0	1	copy fasta	SPATA13	chr13	24155720	24312069
SPATA13_chr13_24155720_24312069	0/0	t0024	4621	3	1	2	0	0	0	copy fasta	SPATA13	chr13	24155720	24312069
SPATA13_chr13_24155720_24312069	0/0	t0025	4621	3	3	0	0	0	0	copy fasta	SPATA13	chr13	24155720	24312069
SPATA13_chr13_24155720_24312069	0/0	t0026	4621	3	0	1	1	0	1	copy fasta	SPATA13	chr13	24155720	24312069
SPATA13_chr13_24155720_24312069	0/0	t0027	4620	3	0	0	3	0	0	copy fasta	SPATA13	chr13	24155720	24312069
SPATA13_chr13_24155720_24312069	0/0	t0028	4621	3	1	0	1	1	0	copy fasta	SPATA13	chr13	24155720	24312069
SPATA13_chr13_24155720_24312069	0/0	t0029	4621	3	2	1	0	0	0	copy fasta	SPATA13	chr13	24155720	24312069
SPATA13_chr13_24155720_24312069	0/0	t0030	4621	3	1	2	0	0	0	copy fasta	SPATA13	chr13	24155720	24312069
SPATA13_chr13_24155720_24312069	0/0	t0031	4621	3	1	0	1	0	1	copy fasta	SPATA13	chr13	24155720	24312069
SPATA13_chr13_24155720_24312069	0/0	t0032	4621	3	0	1	2	0	0	copy fasta	SPATA13	chr13	24155720	24312069
SPATA13_chr13_24155720_24312069	0/0	t0033	4621	3	0	0	1	0	2	copy fasta	SPATA13	chr13	24155720	24312069
SPATA13_chr13_24155720_24312069	0/0	t0034	4621	2	0	0	2	0	0	copy fasta	SPATA13	chr13	24155720	24312069
SPATA13_chr13_24155720_24312069	0/0	t0035	4620	2	0	0	2	0	0	copy fasta	SPATA13	chr13	24155720	24312069
SPATA13_chr13_24155720_24312069	0/0	t0036	4621	2	2	0	0	0	0	copy fasta	SPATA13	chr13	24155720	24312069
SPATA13_chr13_24155720_24312069	0/0	t0037	4621	2	2	0	0	0	0	copy fasta	SPATA13	chr13	24155720	24312069
SPATA13_chr13_24155720_24312069	0/0	t0038	4621	2	0	0	2	0	0	copy fasta	SPATA13	chr13	24155720	24312069
SPATA13_chr13_24155720_24312069	0/0	t0039	4621	2	0	0	2	0	0	copy fasta	SPATA13	chr13	24155720	24312069
SPATA13_chr13_24155720_24312069	0/0	t0040	4621	2	1	0	0	0	1	copy fasta	SPATA13	chr13	24155720	24312069
SPATA13_chr13_24155720_24312069	0/0	t0041	4621	2	0	0	1	1	0	copy fasta	SPATA13	chr13	24155720	24312069
SPATA13_chr13_24155720_24312069	0/0	t0042	4621	2	2	0	0	0	0	copy fasta	SPATA13	chr13	24155720	24312069
SPATA13_chr13_24155720_24312069	0/0	t0043	4621	2	2	0	0	0	0	copy fasta	SPATA13	chr13	24155720	24312069
SPATA13_chr13_24155720_24312069	0/0	t0044	4621	2	2	0	0	0	0	copy fasta	SPATA13	chr13	24155720	24312069
SPATA13_chr13_24155720_24312069	0/0	t0045	4620	2	2	0	0	0	0	copy fasta	SPATA13	chr13	24155720	24312069
SPATA13_chr13_24155720_24312069	0/0	t0046	4620	2	0	1	1	0	0	copy fasta	SPATA13	chr13	24155720	24312069
SPATA13_chr13_24155720_24312069	0/0	t0047	4621	2	0	2	0	0	0	copy fasta	SPATA13	chr13	24155720	24312069
SPATA13_chr13_24155720_24312069	0/0	t0048	4621	2	1	1	0	0	0	copy fasta	SPATA13	chr13	24155720	24312069
SPATA13_chr13_24155720_24312069	0/0	t0049	4621	2	1	1	0	0	0	copy fasta	SPATA13	chr13	24155720	24312069
SPATA13_chr13_24155720_24312069	0/0	t0050	4620	2	2	0	0	0	0	copy fasta	SPATA13	chr13	24155720	24312069
SPATA13_chr13_24155720_24312069	0/0	t0051	4620	2	0	0	2	0	0	copy fasta	SPATA13	chr13	24155720	24312069
SPATA13_chr13_24155720_24312069	0/0	t0052	4621	2	2	0	0	0	0	copy fasta	SPATA13	chr13	24155720	24312069
SPATA13_chr13_24155720_24312069	0/0	t0053	4621	2	0	1	1	0	0	copy fasta	SPATA13	chr13	24155720	24312069
SPATA13_chr13_24155720_24312069	0/0	t0054	4621	2	0	0	1	0	1	copy fasta	SPATA13	chr13	24155720	24312069
SPATA13_chr13_24155720_24312069	0/0	t0055	4621	1	0	0	1	0	0	copy fasta	SPATA13	chr13	24155720	24312069
SPATA13_chr13_24155720_24312069	0/0	t0056	4621	1	1	0	0	0	0	copy fasta	SPATA13	chr13	24155720	24312069
SPATA13_chr13_24155720_24312069	0/0	t0057	4621	1	1	0	0	0	0	copy fasta	SPATA13	chr13	24155720	24312069
SPATA13_chr13_24155720_24312069	0/0	t0058	4621	1	0	1	0	0	0	copy fasta	SPATA13	chr13	24155720	24312069
SPATA13_chr13_24155720_24312069	0/0	t0059	4621	1	1	0	0	0	0	copy fasta	SPATA13	chr13	24155720	24312069