JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SPATA13_chr13_24155720_24312069	0/0	t0110	4621	1	0	0	1	0	0	copy fasta	SPATA13	chr13	24155720	24312069
SPATA13_chr13_24155720_24312069	0/0	t0111	4621	1	0	0	0	0	1	copy fasta	SPATA13	chr13	24155720	24312069
SPATA13_chr13_24155720_24312069	0/0	t0112	4621	1	0	0	0	0	1	copy fasta	SPATA13	chr13	24155720	24312069
SPATA13_chr13_24155720_24312069	0/0	t0113	4621	1	0	1	0	0	0	copy fasta	SPATA13	chr13	24155720	24312069
SPATA13_chr13_24155720_24312069	0/0	t0114	4621	1	0	1	0	0	0	copy fasta	SPATA13	chr13	24155720	24312069
SPATA13_chr13_24155720_24312069	0/0	t0115	4621	1	0	0	1	0	0	copy fasta	SPATA13	chr13	24155720	24312069
SPATA13_chr13_24155720_24312069	0/0	t0116	4621	1	1	0	0	0	0	copy fasta	SPATA13	chr13	24155720	24312069
SPATA13_chr13_24155720_24312069	0/0	t0117	4621	1	0	0	1	0	0	copy fasta	SPATA13	chr13	24155720	24312069
SPATA13_chr13_24155720_24312069	0/0	t0118	4621	1	1	0	0	0	0	copy fasta	SPATA13	chr13	24155720	24312069
SPATA13_chr13_24155720_24312069	0/0	t0119	4621	1	0	0	1	0	0	copy fasta	SPATA13	chr13	24155720	24312069
SPATA13_chr13_24155720_24312069	0/0	t0120	4621	1	1	0	0	0	0	copy fasta	SPATA13	chr13	24155720	24312069
SPATA13_chr13_24155720_24312069	0/0	t0121	4621	1	0	0	0	1	0	copy fasta	SPATA13	chr13	24155720	24312069
SPATA13_chr13_24155720_24312069	0/0	t0122	4621	1	0	0	1	0	0	copy fasta	SPATA13	chr13	24155720	24312069
SPATA13_chr13_24155720_24312069	0/0	t0123	4621	1	0	0	0	0	1	copy fasta	SPATA13	chr13	24155720	24312069
SPATA13_chr13_24155720_24312069	0/0	t0124	4621	1	1	0	0	0	0	copy fasta	SPATA13	chr13	24155720	24312069
SPATA13_chr13_24155720_24312069	0/0	t0125	4621	1	1	0	0	0	0	copy fasta	SPATA13	chr13	24155720	24312069
SPATA13_chr13_24155720_24312069	0/0	t0126	4621	1	0	0	0	1	0	copy fasta	SPATA13	chr13	24155720	24312069
SPATA13_chr13_24155720_24312069	0/0	t0127	4621	1	1	0	0	0	0	copy fasta	SPATA13	chr13	24155720	24312069
SPATA13_chr13_24155720_24312069	0/0	t0128	4621	1	0	1	0	0	0	copy fasta	SPATA13	chr13	24155720	24312069
SPATA13_chr13_24155720_24312069	0/0	t0129	4620	1	1	0	0	0	0	copy fasta	SPATA13	chr13	24155720	24312069
SPATA13_chr13_24155720_24312069	0/0	t0130	4621	1	1	0	0	0	0	copy fasta	SPATA13	chr13	24155720	24312069
SPATA13_chr13_24155720_24312069	0/0	t0131	4621	1	1	0	0	0	0	copy fasta	SPATA13	chr13	24155720	24312069
SPATA13_chr13_24155720_24312069	0/0	t0132	4621	1	0	0	1	0	0	copy fasta	SPATA13	chr13	24155720	24312069
SPATA16_chr3_172884357_173146235	1/1	t0001	365	196	74	46	44	2	28	copy fasta	SPATA16	chr3	172884357	173146235
SPATA16_chr3_172884357_173146235	0/0	t0002	365	3	3	0	0	0	0	copy fasta	SPATA16	chr3	172884357	173146235
SPATA16_chr3_172884357_173146235	0/0	t0003	365	1	1	0	0	0	0	copy fasta	SPATA16	chr3	172884357	173146235
SPATA17_chr1_217626344_217876696	0/0	t0001	4712	85	10	13	45	2	15	copy fasta	SPATA17	chr1	217626344	217876696
SPATA17_chr1_217626344_217876696	0/0	t0002	4711	25	0	11	10	4	0	copy fasta	SPATA17	chr1	217626344	217876696
SPATA17_chr1_217626344_217876696	0/1	t0003	4711	20	1	3	14	1	0	copy fasta	SPATA17	chr1	217626344	217876696
SPATA17_chr1_217626344_217876696	0/0	t0004	4711	12	11	1	0	0	0	copy fasta	SPATA17	chr1	217626344	217876696
SPATA17_chr1_217626344_217876696	0/0	t0005	4711	10	7	2	0	1	0	copy fasta	SPATA17	chr1	217626344	217876696
SPATA17_chr1_217626344_217876696	0/0	t0006	4710	7	0	4	0	2	1	copy fasta	SPATA17	chr1	217626344	217876696
SPATA17_chr1_217626344_217876696	0/0	t0007	4711	6	6	0	0	0	0	copy fasta	SPATA17	chr1	217626344	217876696
SPATA17_chr1_217626344_217876696	0/0	t0008	4711	5	5	0	0	0	0	copy fasta	SPATA17	chr1	217626344	217876696
SPATA17_chr1_217626344_217876696	0/0	t0009	4711	5	4	1	0	0	0	copy fasta	SPATA17	chr1	217626344	217876696
SPATA17_chr1_217626344_217876696	0/0	t0010	4712	5	0	2	2	0	1	copy fasta	SPATA17	chr1	217626344	217876696
SPATA17_chr1_217626344_217876696	0/0	t0011	4711	4	0	3	0	0	1	copy fasta	SPATA17	chr1	217626344	217876696
SPATA17_chr1_217626344_217876696	0/0	t0012	4712	4	1	1	0	0	2	copy fasta	SPATA17	chr1	217626344	217876696
SPATA17_chr1_217626344_217876696	0/0	t0013	4710	3	3	0	0	0	0	copy fasta	SPATA17	chr1	217626344	217876696
SPATA17_chr1_217626344_217876696	0/0	t0014	4712	3	0	1	2	0	0	copy fasta	SPATA17	chr1	217626344	217876696
SPATA17_chr1_217626344_217876696	0/0	t0015	4711	3	3	0	0	0	0	copy fasta	SPATA17	chr1	217626344	217876696
SPATA17_chr1_217626344_217876696	0/0	t0016	4711	3	0	0	2	1	0	copy fasta	SPATA17	chr1	217626344	217876696
SPATA17_chr1_217626344_217876696	0/0	t0017	4712	3	0	0	3	0	0	copy fasta	SPATA17	chr1	217626344	217876696
SPATA17_chr1_217626344_217876696	0/0	t0018	4711	3	0	0	3	0	0	copy fasta	SPATA17	chr1	217626344	217876696
SPATA17_chr1_217626344_217876696	0/0	t0019	4712	2	2	0	0	0	0	copy fasta	SPATA17	chr1	217626344	217876696
SPATA17_chr1_217626344_217876696	0/0	t0020	4712	2	2	0	0	0	0	copy fasta	SPATA17	chr1	217626344	217876696
SPATA17_chr1_217626344_217876696	0/0	t0021	4713	2	0	0	1	0	1	copy fasta	SPATA17	chr1	217626344	217876696
SPATA17_chr1_217626344_217876696	0/0	t0022	4711	2	2	0	0	0	0	copy fasta	SPATA17	chr1	217626344	217876696
SPATA17_chr1_217626344_217876696	0/0	t0023	4712	2	2	0	0	0	0	copy fasta	SPATA17	chr1	217626344	217876696
SPATA17_chr1_217626344_217876696	0/0	t0024	4711	2	2	0	0	0	0	copy fasta	SPATA17	chr1	217626344	217876696