JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SPATA17_chr1_217626344_217876696	0/0	t0025	4711	1	1	0	0	0	0	copy fasta	SPATA17	chr1	217626344	217876696
SPATA17_chr1_217626344_217876696	0/0	t0026	4712	1	1	0	0	0	0	copy fasta	SPATA17	chr1	217626344	217876696
SPATA17_chr1_217626344_217876696	0/0	t0027	4711	1	1	0	0	0	0	copy fasta	SPATA17	chr1	217626344	217876696
SPATA17_chr1_217626344_217876696	0/0	t0028	4711	1	0	1	0	0	0	copy fasta	SPATA17	chr1	217626344	217876696
SPATA17_chr1_217626344_217876696	0/0	t0029	4710	1	0	0	0	0	1	copy fasta	SPATA17	chr1	217626344	217876696
SPATA17_chr1_217626344_217876696	0/0	t0030	4710	1	1	0	0	0	0	copy fasta	SPATA17	chr1	217626344	217876696
SPATA17_chr1_217626344_217876696	0/0	t0031	4711	1	0	0	1	0	0	copy fasta	SPATA17	chr1	217626344	217876696
SPATA17_chr1_217626344_217876696	0/0	t0032	4710	1	1	0	0	0	0	copy fasta	SPATA17	chr1	217626344	217876696
SPATA17_chr1_217626344_217876696	0/0	t0033	4710	1	0	1	0	0	0	copy fasta	SPATA17	chr1	217626344	217876696
SPATA17_chr1_217626344_217876696	0/0	t0034	4711	1	1	0	0	0	0	copy fasta	SPATA17	chr1	217626344	217876696
SPATA17_chr1_217626344_217876696	0/0	t0035	4711	1	1	0	0	0	0	copy fasta	SPATA17	chr1	217626344	217876696
SPATA17_chr1_217626344_217876696	0/0	t0036	4711	1	1	0	0	0	0	copy fasta	SPATA17	chr1	217626344	217876696
SPATA17_chr1_217626344_217876696	0/0	t0037	4711	1	1	0	0	0	0	copy fasta	SPATA17	chr1	217626344	217876696
SPATA17_chr1_217626344_217876696	0/0	t0038	4712	1	1	0	0	0	0	copy fasta	SPATA17	chr1	217626344	217876696
SPATA17_chr1_217626344_217876696	0/0	t0039	4712	1	1	0	0	0	0	copy fasta	SPATA17	chr1	217626344	217876696
SPATA17_chr1_217626344_217876696	0/0	t0040	4712	1	0	0	0	0	1	copy fasta	SPATA17	chr1	217626344	217876696
SPATA17_chr1_217626344_217876696	0/0	t0041	4712	1	0	0	1	0	0	copy fasta	SPATA17	chr1	217626344	217876696
SPATA17_chr1_217626344_217876696	0/0	t0042	4712	1	1	0	0	0	0	copy fasta	SPATA17	chr1	217626344	217876696
SPATA17_chr1_217626344_217876696	0/0	t0043	4712	1	0	0	0	1	0	copy fasta	SPATA17	chr1	217626344	217876696
SPATA17_chr1_217626344_217876696	0/0	t0044	4712	1	0	0	0	0	1	copy fasta	SPATA17	chr1	217626344	217876696
SPATA17_chr1_217626344_217876696	0/0	t0045	4712	1	0	0	1	0	0	copy fasta	SPATA17	chr1	217626344	217876696
SPATA17_chr1_217626344_217876696	0/0	t0046	4712	1	0	0	1	0	0	copy fasta	SPATA17	chr1	217626344	217876696
SPATA17_chr1_217626344_217876696	1/0	t0047	4713	1	0	0	0	0	0	copy fasta	SPATA17	chr1	217626344	217876696
SPATA17_chr1_217626344_217876696	0/0	t0048	4713	1	1	0	0	0	0	copy fasta	SPATA17	chr1	217626344	217876696
SPATA17_chr1_217626344_217876696	0/0	t0049	4713	1	1	0	0	0	0	copy fasta	SPATA17	chr1	217626344	217876696
SPATA17_chr1_217626344_217876696	0/0	t0050	4713	1	0	0	1	0	0	copy fasta	SPATA17	chr1	217626344	217876696
SPATA17_chr1_217626344_217876696	0/0	t0051	4713	1	0	0	1	0	0	copy fasta	SPATA17	chr1	217626344	217876696
SPATA17_chr1_217626344_217876696	0/0	t0052	4710	1	1	0	0	0	0	copy fasta	SPATA17	chr1	217626344	217876696
SPATA17_chr1_217626344_217876696	0/0	t0053	4711	1	1	0	0	0	0	copy fasta	SPATA17	chr1	217626344	217876696
SPATA17_chr1_217626344_217876696	0/0	t0054	4711	1	1	0	0	0	0	copy fasta	SPATA17	chr1	217626344	217876696
SPATA17_chr1_217626344_217876696	0/0	t0055	4712	1	1	0	0	0	0	copy fasta	SPATA17	chr1	217626344	217876696
SPATA17_chr1_217626344_217876696	0/0	t0056	4710	1	1	0	0	0	0	copy fasta	SPATA17	chr1	217626344	217876696
SPATA17_chr1_217626344_217876696	0/0	t0057	4712	1	0	0	0	0	1	copy fasta	SPATA17	chr1	217626344	217876696
SPATA17_chr1_217626344_217876696	0/0	t0058	4712	1	0	0	0	0	1	copy fasta	SPATA17	chr1	217626344	217876696
SPATA18_chr4_52046304_52102299	0/0	t0001	2813	102	9	21	54	9	9	copy fasta	SPATA18	chr4	52046304	52102299
SPATA18_chr4_52046304_52102299	0/1	t0002	2814	77	5	12	53	0	6	copy fasta	SPATA18	chr4	52046304	52102299
SPATA18_chr4_52046304_52102299	0/0	t0003	2813	61	7	7	32	6	9	copy fasta	SPATA18	chr4	52046304	52102299
SPATA18_chr4_52046304_52102299	1/0	t0004	2814	45	40	3	0	0	1	copy fasta	SPATA18	chr4	52046304	52102299
SPATA18_chr4_52046304_52102299	0/0	t0005	2815	4	4	0	0	0	0	copy fasta	SPATA18	chr4	52046304	52102299
SPATA18_chr4_52046304_52102299	0/0	t0006	2815	3	3	0	0	0	0	copy fasta	SPATA18	chr4	52046304	52102299
SPATA18_chr4_52046304_52102299	0/0	t0007	2813	2	0	0	0	0	2	copy fasta	SPATA18	chr4	52046304	52102299
SPATA18_chr4_52046304_52102299	0/0	t0008	2813	1	0	0	1	0	0	copy fasta	SPATA18	chr4	52046304	52102299
SPATA18_chr4_52046304_52102299	0/0	t0009	2814	1	0	0	0	0	1	copy fasta	SPATA18	chr4	52046304	52102299
SPATA18_chr4_52046304_52102299	0/0	t0010	2814	1	0	1	0	0	0	copy fasta	SPATA18	chr4	52046304	52102299
SPATA18_chr4_52046304_52102299	0/0	t0011	2814	1	0	0	0	1	0	copy fasta	SPATA18	chr4	52046304	52102299
SPATA18_chr4_52046304_52102299	0/0	t0012	2813	1	0	0	1	0	0	copy fasta	SPATA18	chr4	52046304	52102299
SPATA18_chr4_52046304_52102299	0/0	t0013	2814	1	0	0	1	0	0	copy fasta	SPATA18	chr4	52046304	52102299
SPATA18_chr4_52046304_52102299	0/0	t0014	2813	1	1	0	0	0	0	copy fasta	SPATA18	chr4	52046304	52102299
SPATA18_chr4_52046304_52102299	0/0	t0015	2814	1	1	0	0	0	0	copy fasta	SPATA18	chr4	52046304	52102299
SPATA18_chr4_52046304_52102299	0/0	t0016	2814	1	1	0	0	0	0	copy fasta	SPATA18	chr4	52046304	52102299