JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SPATA2L_chr16_89691357_89706705	0/0	t0011	1056	5	4	1	0	0	0	copy fasta	SPATA2L	chr16	89691357	89706705
SPATA2L_chr16_89691357_89706705	0/0	t0012	1056	4	0	0	4	0	0	copy fasta	SPATA2L	chr16	89691357	89706705
SPATA2L_chr16_89691357_89706705	0/0	t0013	1056	2	0	2	0	0	0	copy fasta	SPATA2L	chr16	89691357	89706705
SPATA2L_chr16_89691357_89706705	0/0	t0014	1056	2	2	0	0	0	0	copy fasta	SPATA2L	chr16	89691357	89706705
SPATA2L_chr16_89691357_89706705	0/0	t0015	1056	2	2	0	0	0	0	copy fasta	SPATA2L	chr16	89691357	89706705
SPATA2L_chr16_89691357_89706705	0/0	t0016	1056	1	0	1	0	0	0	copy fasta	SPATA2L	chr16	89691357	89706705
SPATA2L_chr16_89691357_89706705	0/0	t0017	1056	1	0	0	1	0	0	copy fasta	SPATA2L	chr16	89691357	89706705
SPATA2L_chr16_89691357_89706705	0/0	t0018	1056	1	1	0	0	0	0	copy fasta	SPATA2L	chr16	89691357	89706705
SPATA2L_chr16_89691357_89706705	0/0	t0019	1056	1	1	0	0	0	0	copy fasta	SPATA2L	chr16	89691357	89706705
SPATA2L_chr16_89691357_89706705	0/0	t0020	1056	1	0	0	1	0	0	copy fasta	SPATA2L	chr16	89691357	89706705
SPATA2L_chr16_89691357_89706705	0/0	t0021	1056	1	0	0	1	0	0	copy fasta	SPATA2L	chr16	89691357	89706705
SPATA2L_chr16_89691357_89706705	0/0	t0022	1056	1	0	0	0	0	1	copy fasta	SPATA2L	chr16	89691357	89706705
SPATA2L_chr16_89691357_89706705	0/0	t0023	1055	1	0	0	1	0	0	copy fasta	SPATA2L	chr16	89691357	89706705
SPATA2L_chr16_89691357_89706705	0/0	t0024	1056	1	0	0	1	0	0	copy fasta	SPATA2L	chr16	89691357	89706705
SPATA2L_chr16_89691357_89706705	0/0	t0025	1056	1	0	0	1	0	0	copy fasta	SPATA2L	chr16	89691357	89706705
SPATA2L_chr16_89691357_89706705	0/0	t0026	1056	1	1	0	0	0	0	copy fasta	SPATA2L	chr16	89691357	89706705
SPATA2L_chr16_89691357_89706705	0/0	t0027	1056	1	1	0	0	0	0	copy fasta	SPATA2L	chr16	89691357	89706705
SPATA2L_chr16_89691357_89706705	0/0	t0028	1056	1	1	0	0	0	0	copy fasta	SPATA2L	chr16	89691357	89706705
SPATA2_chr20_49898391_49920529	0/0	t0001	2459	97	3	34	46	0	14	copy fasta	SPATA2	chr20	49898391	49920529
SPATA2_chr20_49898391_49920529	0/0	t0002	2461	46	1	1	44	0	0	copy fasta	SPATA2	chr20	49898391	49920529
SPATA2_chr20_49898391_49920529	0/0	t0003	2461	32	0	2	16	4	10	copy fasta	SPATA2	chr20	49898391	49920529
SPATA2_chr20_49898391_49920529	0/0	t0004	2461	17	6	4	5	0	2	copy fasta	SPATA2	chr20	49898391	49920529
SPATA2_chr20_49898391_49920529	0/0	t0005	2477	14	4	4	4	2	0	copy fasta	SPATA2	chr20	49898391	49920529
SPATA2_chr20_49898391_49920529	1/0	t0006	2481	11	1	2	7	0	0	copy fasta	SPATA2	chr20	49898391	49920529
SPATA2_chr20_49898391_49920529	0/0	t0007	2479	11	2	2	3	1	3	copy fasta	SPATA2	chr20	49898391	49920529
SPATA2_chr20_49898391_49920529	0/0	t0008	2475	9	6	3	0	0	0	copy fasta	SPATA2	chr20	49898391	49920529
SPATA2_chr20_49898391_49920529	0/0	t0009	2475	8	1	4	0	2	1	copy fasta	SPATA2	chr20	49898391	49920529
SPATA2_chr20_49898391_49920529	0/0	t0010	2477	7	6	0	0	0	1	copy fasta	SPATA2	chr20	49898391	49920529
SPATA2_chr20_49898391_49920529	0/0	t0011	2465	7	5	1	0	0	1	copy fasta	SPATA2	chr20	49898391	49920529
SPATA2_chr20_49898391_49920529	0/0	t0012	2459	7	5	1	1	0	0	copy fasta	SPATA2	chr20	49898391	49920529
SPATA2_chr20_49898391_49920529	0/0	t0013	2463	6	0	0	5	0	1	copy fasta	SPATA2	chr20	49898391	49920529
SPATA2_chr20_49898391_49920529	0/0	t0014	2459	6	0	0	6	0	0	copy fasta	SPATA2	chr20	49898391	49920529
SPATA2_chr20_49898391_49920529	0/0	t0015	2483	6	0	0	2	3	1	copy fasta	SPATA2	chr20	49898391	49920529
SPATA2_chr20_49898391_49920529	0/0	t0016	2463	5	3	0	0	1	1	copy fasta	SPATA2	chr20	49898391	49920529
SPATA2_chr20_49898391_49920529	0/0	t0017	2481	5	1	1	3	0	0	copy fasta	SPATA2	chr20	49898391	49920529
SPATA2_chr20_49898391_49920529	0/0	t0018	2479	4	2	1	0	0	1	copy fasta	SPATA2	chr20	49898391	49920529
SPATA2_chr20_49898391_49920529	0/0	t0019	2467	4	4	0	0	0	0	copy fasta	SPATA2	chr20	49898391	49920529
SPATA2_chr20_49898391_49920529	0/0	t0020	2485	4	0	1	2	0	1	copy fasta	SPATA2	chr20	49898391	49920529
SPATA2_chr20_49898391_49920529	0/0	t0021	2481	3	3	0	0	0	0	copy fasta	SPATA2	chr20	49898391	49920529
SPATA2_chr20_49898391_49920529	0/0	t0022	2479	3	0	0	3	0	0	copy fasta	SPATA2	chr20	49898391	49920529
SPATA2_chr20_49898391_49920529	0/0	t0023	2473	3	2	1	0	0	0	copy fasta	SPATA2	chr20	49898391	49920529
SPATA2_chr20_49898391_49920529	0/0	t0024	2473	3	0	2	0	1	0	copy fasta	SPATA2	chr20	49898391	49920529
SPATA2_chr20_49898391_49920529	0/0	t0025	2459	3	3	0	0	0	0	copy fasta	SPATA2	chr20	49898391	49920529
SPATA2_chr20_49898391_49920529	0/0	t0026	2457	3	3	0	0	0	0	copy fasta	SPATA2	chr20	49898391	49920529
SPATA2_chr20_49898391_49920529	0/0	t0027	2461	3	0	0	3	0	0	copy fasta	SPATA2	chr20	49898391	49920529
SPATA2_chr20_49898391_49920529	0/0	t0028	2457	3	0	3	0	0	0	copy fasta	SPATA2	chr20	49898391	49920529
SPATA2_chr20_49898391_49920529	0/0	t0029	2463	3	0	0	3	0	0	copy fasta	SPATA2	chr20	49898391	49920529
SPATA2_chr20_49898391_49920529	0/0	t0030	2459	3	0	0	3	0	0	copy fasta	SPATA2	chr20	49898391	49920529
SPATA2_chr20_49898391_49920529	0/0	t0031	2459	3	0	0	0	0	3	copy fasta	SPATA2	chr20	49898391	49920529
SPATA2_chr20_49898391_49920529	0/0	t0032	2471	3	0	0	3	0	0	copy fasta	SPATA2	chr20	49898391	49920529