JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SPATA2_chr20_49898391_49920529	0/0	t0033	2469	3	0	0	3	0	0	copy fasta	SPATA2	chr20	49898391	49920529
SPATA2_chr20_49898391_49920529	0/0	t0034	2472	2	2	0	0	0	0	copy fasta	SPATA2	chr20	49898391	49920529
SPATA2_chr20_49898391_49920529	0/0	t0035	2479	2	1	0	0	1	0	copy fasta	SPATA2	chr20	49898391	49920529
SPATA2_chr20_49898391_49920529	0/0	t0036	2485	2	1	0	1	0	0	copy fasta	SPATA2	chr20	49898391	49920529
SPATA2_chr20_49898391_49920529	0/0	t0037	2483	2	0	1	0	0	1	copy fasta	SPATA2	chr20	49898391	49920529
SPATA2_chr20_49898391_49920529	0/0	t0038	2495	2	0	0	2	0	0	copy fasta	SPATA2	chr20	49898391	49920529
SPATA2_chr20_49898391_49920529	0/0	t0039	2485	2	1	0	1	0	0	copy fasta	SPATA2	chr20	49898391	49920529
SPATA2_chr20_49898391_49920529	0/0	t0040	2493	2	0	0	2	0	0	copy fasta	SPATA2	chr20	49898391	49920529
SPATA2_chr20_49898391_49920529	0/0	t0041	2483	2	1	0	0	1	0	copy fasta	SPATA2	chr20	49898391	49920529
SPATA2_chr20_49898391_49920529	0/0	t0042	2471	2	1	1	0	0	0	copy fasta	SPATA2	chr20	49898391	49920529
SPATA2_chr20_49898391_49920529	0/0	t0043	2467	2	1	0	0	0	1	copy fasta	SPATA2	chr20	49898391	49920529
SPATA2_chr20_49898391_49920529	0/0	t0044	2449	2	2	0	0	0	0	copy fasta	SPATA2	chr20	49898391	49920529
SPATA2_chr20_49898391_49920529	0/0	t0045	2467	2	0	0	2	0	0	copy fasta	SPATA2	chr20	49898391	49920529
SPATA2_chr20_49898391_49920529	0/0	t0046	2465	2	0	0	2	0	0	copy fasta	SPATA2	chr20	49898391	49920529
SPATA2_chr20_49898391_49920529	0/0	t0047	2487	2	0	0	2	0	0	copy fasta	SPATA2	chr20	49898391	49920529
SPATA2_chr20_49898391_49920529	0/0	t0048	2477	2	0	0	2	0	0	copy fasta	SPATA2	chr20	49898391	49920529
SPATA2_chr20_49898391_49920529	0/0	t0049	2485	1	0	0	1	0	0	copy fasta	SPATA2	chr20	49898391	49920529
SPATA2_chr20_49898391_49920529	0/0	t0050	2488	1	1	0	0	0	0	copy fasta	SPATA2	chr20	49898391	49920529
SPATA2_chr20_49898391_49920529	0/0	t0051	2482	1	1	0	0	0	0	copy fasta	SPATA2	chr20	49898391	49920529
SPATA2_chr20_49898391_49920529	0/0	t0052	2480	1	1	0	0	0	0	copy fasta	SPATA2	chr20	49898391	49920529
SPATA2_chr20_49898391_49920529	0/0	t0053	2476	1	1	0	0	0	0	copy fasta	SPATA2	chr20	49898391	49920529
SPATA2_chr20_49898391_49920529	0/0	t0054	2474	1	0	1	0	0	0	copy fasta	SPATA2	chr20	49898391	49920529
SPATA2_chr20_49898391_49920529	0/0	t0055	2468	1	1	0	0	0	0	copy fasta	SPATA2	chr20	49898391	49920529
SPATA2_chr20_49898391_49920529	0/0	t0056	2475	1	1	0	0	0	0	copy fasta	SPATA2	chr20	49898391	49920529
SPATA2_chr20_49898391_49920529	0/0	t0057	2483	1	0	1	0	0	0	copy fasta	SPATA2	chr20	49898391	49920529
SPATA2_chr20_49898391_49920529	0/0	t0058	2481	1	1	0	0	0	0	copy fasta	SPATA2	chr20	49898391	49920529
SPATA2_chr20_49898391_49920529	0/0	t0059	2477	1	1	0	0	0	0	copy fasta	SPATA2	chr20	49898391	49920529
SPATA2_chr20_49898391_49920529	0/0	t0060	2473	1	0	1	0	0	0	copy fasta	SPATA2	chr20	49898391	49920529
SPATA2_chr20_49898391_49920529	0/0	t0061	2465	1	0	1	0	0	0	copy fasta	SPATA2	chr20	49898391	49920529
SPATA2_chr20_49898391_49920529	0/0	t0062	2461	1	0	0	0	0	1	copy fasta	SPATA2	chr20	49898391	49920529
SPATA2_chr20_49898391_49920529	0/0	t0063	2481	1	1	0	0	0	0	copy fasta	SPATA2	chr20	49898391	49920529
SPATA2_chr20_49898391_49920529	0/0	t0064	2493	1	1	0	0	0	0	copy fasta	SPATA2	chr20	49898391	49920529
SPATA2_chr20_49898391_49920529	0/0	t0065	2501	1	0	0	1	0	0	copy fasta	SPATA2	chr20	49898391	49920529
SPATA2_chr20_49898391_49920529	0/1	t0066	2491	1	0	0	0	0	0	copy fasta	SPATA2	chr20	49898391	49920529
SPATA2_chr20_49898391_49920529	0/0	t0067	2487	1	0	1	0	0	0	copy fasta	SPATA2	chr20	49898391	49920529
SPATA2_chr20_49898391_49920529	0/0	t0068	2485	1	0	0	1	0	0	copy fasta	SPATA2	chr20	49898391	49920529
SPATA2_chr20_49898391_49920529	0/0	t0069	2481	1	0	0	1	0	0	copy fasta	SPATA2	chr20	49898391	49920529
SPATA2_chr20_49898391_49920529	0/0	t0070	2481	1	1	0	0	0	0	copy fasta	SPATA2	chr20	49898391	49920529
SPATA2_chr20_49898391_49920529	0/0	t0071	2473	1	0	1	0	0	0	copy fasta	SPATA2	chr20	49898391	49920529
SPATA2_chr20_49898391_49920529	0/0	t0072	2475	1	0	0	1	0	0	copy fasta	SPATA2	chr20	49898391	49920529
SPATA2_chr20_49898391_49920529	0/0	t0073	2479	1	0	0	0	0	1	copy fasta	SPATA2	chr20	49898391	49920529
SPATA2_chr20_49898391_49920529	0/0	t0074	2477	1	0	0	1	0	0	copy fasta	SPATA2	chr20	49898391	49920529
SPATA2_chr20_49898391_49920529	0/0	t0075	2469	1	1	0	0	0	0	copy fasta	SPATA2	chr20	49898391	49920529
SPATA2_chr20_49898391_49920529	0/0	t0076	2471	1	0	0	1	0	0	copy fasta	SPATA2	chr20	49898391	49920529
SPATA2_chr20_49898391_49920529	0/0	t0077	2469	1	1	0	0	0	0	copy fasta	SPATA2	chr20	49898391	49920529
SPATA2_chr20_49898391_49920529	0/0	t0078	2471	1	1	0	0	0	0	copy fasta	SPATA2	chr20	49898391	49920529
SPATA2_chr20_49898391_49920529	0/0	t0079	2463	1	1	0	0	0	0	copy fasta	SPATA2	chr20	49898391	49920529
SPATA2_chr20_49898391_49920529	0/0	t0080	2473	1	1	0	0	0	0	copy fasta	SPATA2	chr20	49898391	49920529
SPATA2_chr20_49898391_49920529	0/0	t0081	2461	1	1	0	0	0	0	copy fasta	SPATA2	chr20	49898391	49920529
SPATA2_chr20_49898391_49920529	0/0	t0082	2471	1	1	0	0	0	0	copy fasta	SPATA2	chr20	49898391	49920529