Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
BICD2_chr9_92706363_92769833	0/0	t0021	3881	1	1	0	0	0	0	copy fasta	BICD2	chr9	92706363	92769833
BICD2_chr9_92706363_92769833	0/0	t0022	3881	1	0	0	1	0	0	copy fasta	BICD2	chr9	92706363	92769833
BICD2_chr9_92706363_92769833	0/0	t0023	3881	1	0	0	1	0	0	copy fasta	BICD2	chr9	92706363	92769833
BICD2_chr9_92706363_92769833	0/0	t0024	3899	1	0	0	0	0	1	copy fasta	BICD2	chr9	92706363	92769833
BICD2_chr9_92706363_92769833	0/0	t0025	3896	1	0	0	1	0	0	copy fasta	BICD2	chr9	92706363	92769833
BICD2_chr9_92706363_92769833	0/0	t0026	3890	1	1	0	0	0	0	copy fasta	BICD2	chr9	92706363	92769833
BICD2_chr9_92706363_92769833	0/0	t0027	3887	1	1	0	0	0	0	copy fasta	BICD2	chr9	92706363	92769833
BICD2_chr9_92706363_92769833	0/0	t0028	3887	1	0	0	1	0	0	copy fasta	BICD2	chr9	92706363	92769833
BICD2_chr9_92706363_92769833	0/0	t0029	3887	1	0	0	1	0	0	copy fasta	BICD2	chr9	92706363	92769833
BICD2_chr9_92706363_92769833	0/0	t0030	3887	1	0	0	1	0	0	copy fasta	BICD2	chr9	92706363	92769833
BICD2_chr9_92706363_92769833	0/0	t0031	3887	1	0	1	0	0	0	copy fasta	BICD2	chr9	92706363	92769833
BICD2_chr9_92706363_92769833	0/0	t0032	3887	1	0	0	1	0	0	copy fasta	BICD2	chr9	92706363	92769833
BICD2_chr9_92706363_92769833	0/0	t0033	3884	1	0	0	1	0	0	copy fasta	BICD2	chr9	92706363	92769833
BICD2_chr9_92706363_92769833	0/0	t0034	3884	1	0	0	1	0	0	copy fasta	BICD2	chr9	92706363	92769833
BICD2_chr9_92706363_92769833	0/0	t0035	3884	1	0	0	0	1	0	copy fasta	BICD2	chr9	92706363	92769833
BICD2_chr9_92706363_92769833	0/0	t0036	3881	1	1	0	0	0	0	copy fasta	BICD2	chr9	92706363	92769833
BICD2_chr9_92706363_92769833	0/0	t0037	3881	1	0	0	1	0	0	copy fasta	BICD2	chr9	92706363	92769833
BICDL1_chr12_119984236_120099494	0/0	t0001	1973	108	23	18	58	3	6	copy fasta	BICDL1	chr12	119984236	120099494
BICDL1_chr12_119984236_120099494	0/1	t0002	1976	65	17	10	28	0	9	copy fasta	BICDL1	chr12	119984236	120099494
BICDL1_chr12_119984236_120099494	0/0	t0003	1970	22	11	5	4	0	2	copy fasta	BICDL1	chr12	119984236	120099494
BICDL1_chr12_119984236_120099494	0/0	t0004	1970	18	14	3	0	0	1	copy fasta	BICDL1	chr12	119984236	120099494
BICDL1_chr12_119984236_120099494	0/0	t0005	1979	13	0	0	13	0	0	copy fasta	BICDL1	chr12	119984236	120099494
BICDL1_chr12_119984236_120099494	0/0	t0006	1970	12	0	0	12	0	0	copy fasta	BICDL1	chr12	119984236	120099494
BICDL1_chr12_119984236_120099494	0/0	t0007	1976	9	0	0	9	0	0	copy fasta	BICDL1	chr12	119984236	120099494
BICDL1_chr12_119984236_120099494	1/0	t0008	1967	9	0	4	1	2	1	copy fasta	BICDL1	chr12	119984236	120099494
BICDL1_chr12_119984236_120099494	0/0	t0009	1973	7	7	0	0	0	0	copy fasta	BICDL1	chr12	119984236	120099494
BICDL1_chr12_119984236_120099494	0/0	t0010	1976	5	3	0	0	1	1	copy fasta	BICDL1	chr12	119984236	120099494
BICDL1_chr12_119984236_120099494	0/0	t0011	1973	4	4	0	0	0	0	copy fasta	BICDL1	chr12	119984236	120099494
BICDL1_chr12_119984236_120099494	0/0	t0012	1976	2	0	0	2	0	0	copy fasta	BICDL1	chr12	119984236	120099494
BICDL1_chr12_119984236_120099494	0/0	t0013	1973	2	0	0	0	0	2	copy fasta	BICDL1	chr12	119984236	120099494
BICDL1_chr12_119984236_120099494	0/0	t0014	1973	2	0	0	2	0	0	copy fasta	BICDL1	chr12	119984236	120099494
BICDL1_chr12_119984236_120099494	0/0	t0015	1973	2	2	0	0	0	0	copy fasta	BICDL1	chr12	119984236	120099494
BICDL1_chr12_119984236_120099494	0/0	t0016	1973	2	0	0	2	0	0	copy fasta	BICDL1	chr12	119984236	120099494
BICDL1_chr12_119984236_120099494	0/0	t0017	1964	2	2	0	0	0	0	copy fasta	BICDL1	chr12	119984236	120099494
BICDL1_chr12_119984236_120099494	0/0	t0018	1946	1	1	0	0	0	0	copy fasta	BICDL1	chr12	119984236	120099494
BICDL1_chr12_119984236_120099494	0/0	t0019	1979	1	0	0	1	0	0	copy fasta	BICDL1	chr12	119984236	120099494
BICDL1_chr12_119984236_120099494	0/0	t0020	1976	1	1	0	0	0	0	copy fasta	BICDL1	chr12	119984236	120099494
BICDL1_chr12_119984236_120099494	0/0	t0021	1976	1	1	0	0	0	0	copy fasta	BICDL1	chr12	119984236	120099494
BICDL1_chr12_119984236_120099494	0/0	t0022	1976	1	0	0	1	0	0	copy fasta	BICDL1	chr12	119984236	120099494
BICDL1_chr12_119984236_120099494	0/0	t0023	1973	1	0	0	1	0	0	copy fasta	BICDL1	chr12	119984236	120099494
BICDL1_chr12_119984236_120099494	0/0	t0024	1949	1	0	0	1	0	0	copy fasta	BICDL1	chr12	119984236	120099494
BICDL1_chr12_119984236_120099494	0/0	t0025	1973	1	1	0	0	0	0	copy fasta	BICDL1	chr12	119984236	120099494
BICDL1_chr12_119984236_120099494	0/0	t0026	1973	1	1	0	0	0	0	copy fasta	BICDL1	chr12	119984236	120099494
BICDL1_chr12_119984236_120099494	0/0	t0027	1973	1	1	0	0	0	0	copy fasta	BICDL1	chr12	119984236	120099494
BICDL1_chr12_119984236_120099494	0/0	t0028	1973	1	0	0	1	0	0	copy fasta	BICDL1	chr12	119984236	120099494
BICDL1_chr12_119984236_120099494	0/0	t0029	1970	1	1	0	0	0	0	copy fasta	BICDL1	chr12	119984236	120099494
BICDL2_chr16_3022682_3041944	1/1	t0001	506	168	33	26	83	6	18	copy fasta	BICDL2	chr16	3022682	3041944
BICDL2_chr16_3022682_3041944	0/0	t0002	505	115	43	13	43	7	9	copy fasta	BICDL2	chr16	3022682	3041944
BICDL2_chr16_3022682_3041944	0/0	t0003	504	81	8	26	31	2	14	copy fasta	BICDL2	chr16	3022682	3041944
BICDL2_chr16_3022682_3041944	0/0	t0004	505	17	6	2	6	1	2	copy fasta	BICDL2	chr16	3022682	3041944