JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SPATA31D3_chr9_81938500_81955093	0/0	t0039	2173	1	0	0	0	0	1	copy fasta	SPATA31D3	chr9	81938500	81955093
SPATA31D3_chr9_81938500_81955093	0/0	t0040	2173	1	1	0	0	0	0	copy fasta	SPATA31D3	chr9	81938500	81955093
SPATA31D3_chr9_81938500_81955093	0/0	t0041	2173	1	0	0	1	0	0	copy fasta	SPATA31D3	chr9	81938500	81955093
SPATA31D3_chr9_81938500_81955093	0/0	t0042	2173	1	0	0	1	0	0	copy fasta	SPATA31D3	chr9	81938500	81955093
SPATA31D3_chr9_81938500_81955093	0/0	t0043	2173	1	1	0	0	0	0	copy fasta	SPATA31D3	chr9	81938500	81955093
SPATA31D3_chr9_81938500_81955093	0/0	t0044	2173	1	0	0	1	0	0	copy fasta	SPATA31D3	chr9	81938500	81955093
SPATA31D3_chr9_81938500_81955093	0/0	t0045	2173	1	0	0	1	0	0	copy fasta	SPATA31D3	chr9	81938500	81955093
SPATA31D4_chr9_81923428_81939998	1/1	t0001	2170	231	15	53	119	11	31	copy fasta	SPATA31D4	chr9	81923428	81939998
SPATA31D4_chr9_81923428_81939998	0/0	t0002	2170	40	29	6	0	1	4	copy fasta	SPATA31D4	chr9	81923428	81939998
SPATA31D4_chr9_81923428_81939998	0/0	t0003	87	11	2	0	6	1	2	copy fasta	SPATA31D4	chr9	81923428	81939998
SPATA31D4_chr9_81923428_81939998	0/0	t0004	2170	11	9	1	0	1	0	copy fasta	SPATA31D4	chr9	81923428	81939998
SPATA31D4_chr9_81923428_81939998	0/0	t0005	2170	9	5	2	2	0	0	copy fasta	SPATA31D4	chr9	81923428	81939998
SPATA31D4_chr9_81923428_81939998	0/0	t0006	2170	8	0	0	8	0	0	copy fasta	SPATA31D4	chr9	81923428	81939998
SPATA31D4_chr9_81923428_81939998	0/0	t0007	2170	6	6	0	0	0	0	copy fasta	SPATA31D4	chr9	81923428	81939998
SPATA31D4_chr9_81923428_81939998	0/0	t0008	2170	4	0	3	1	0	0	copy fasta	SPATA31D4	chr9	81923428	81939998
SPATA31D4_chr9_81923428_81939998	0/0	t0009	2170	3	3	0	0	0	0	copy fasta	SPATA31D4	chr9	81923428	81939998
SPATA31D4_chr9_81923428_81939998	0/0	t0010	2170	2	2	0	0	0	0	copy fasta	SPATA31D4	chr9	81923428	81939998
SPATA31D4_chr9_81923428_81939998	0/0	t0011	2170	2	2	0	0	0	0	copy fasta	SPATA31D4	chr9	81923428	81939998
SPATA31D4_chr9_81923428_81939998	0/0	t0012	2170	2	2	0	0	0	0	copy fasta	SPATA31D4	chr9	81923428	81939998
SPATA31D4_chr9_81923428_81939998	0/0	t0013	2170	2	2	0	0	0	0	copy fasta	SPATA31D4	chr9	81923428	81939998
SPATA31D4_chr9_81923428_81939998	0/0	t0014	2170	2	2	0	0	0	0	copy fasta	SPATA31D4	chr9	81923428	81939998
SPATA31D4_chr9_81923428_81939998	0/0	t0015	2170	2	0	0	2	0	0	copy fasta	SPATA31D4	chr9	81923428	81939998
SPATA31D4_chr9_81923428_81939998	0/0	t0016	2170	2	0	0	2	0	0	copy fasta	SPATA31D4	chr9	81923428	81939998
SPATA31D4_chr9_81923428_81939998	0/0	t0017	2170	2	0	0	2	0	0	copy fasta	SPATA31D4	chr9	81923428	81939998
SPATA31D4_chr9_81923428_81939998	0/0	t0018	2170	2	0	1	0	0	1	copy fasta	SPATA31D4	chr9	81923428	81939998
SPATA31D4_chr9_81923428_81939998	0/0	t0019	2170	1	0	0	1	0	0	copy fasta	SPATA31D4	chr9	81923428	81939998
SPATA31D4_chr9_81923428_81939998	0/0	t0020	2170	1	1	0	0	0	0	copy fasta	SPATA31D4	chr9	81923428	81939998
SPATA31D4_chr9_81923428_81939998	0/0	t0021	2170	1	0	0	0	0	1	copy fasta	SPATA31D4	chr9	81923428	81939998
SPATA31D4_chr9_81923428_81939998	0/0	t0022	241	1	0	0	1	0	0	copy fasta	SPATA31D4	chr9	81923428	81939998
SPATA31D4_chr9_81923428_81939998	0/0	t0023	2170	1	0	1	0	0	0	copy fasta	SPATA31D4	chr9	81923428	81939998
SPATA31D4_chr9_81923428_81939998	0/0	t0024	2170	1	1	0	0	0	0	copy fasta	SPATA31D4	chr9	81923428	81939998
SPATA31D4_chr9_81923428_81939998	0/0	t0025	2170	1	0	0	0	0	1	copy fasta	SPATA31D4	chr9	81923428	81939998
SPATA31D4_chr9_81923428_81939998	0/0	t0026	2170	1	0	0	0	0	1	copy fasta	SPATA31D4	chr9	81923428	81939998
SPATA31D4_chr9_81923428_81939998	0/0	t0027	1201	1	0	0	1	0	0	copy fasta	SPATA31D4	chr9	81923428	81939998
SPATA31D4_chr9_81923428_81939998	0/0	t0028	2170	1	0	0	1	0	0	copy fasta	SPATA31D4	chr9	81923428	81939998
SPATA31D4_chr9_81923428_81939998	0/0	t0029	2170	1	0	0	0	0	1	copy fasta	SPATA31D4	chr9	81923428	81939998
SPATA31D4_chr9_81923428_81939998	0/0	t0030	2170	1	1	0	0	0	0	copy fasta	SPATA31D4	chr9	81923428	81939998
SPATA31D4_chr9_81923428_81939998	0/0	t0031	2170	1	1	0	0	0	0	copy fasta	SPATA31D4	chr9	81923428	81939998
SPATA31D4_chr9_81923428_81939998	0/0	t0032	2170	1	0	0	1	0	0	copy fasta	SPATA31D4	chr9	81923428	81939998
SPATA31D4_chr9_81923428_81939998	0/0	t0033	2170	1	0	1	0	0	0	copy fasta	SPATA31D4	chr9	81923428	81939998
SPATA31D4_chr9_81923428_81939998	0/0	t0034	2170	1	1	0	0	0	0	copy fasta	SPATA31D4	chr9	81923428	81939998
SPATA31D4_chr9_81923428_81939998	0/0	t0035	2170	1	1	0	0	0	0	copy fasta	SPATA31D4	chr9	81923428	81939998
SPATA31D4_chr9_81923428_81939998	0/0	t0036	2170	1	0	0	1	0	0	copy fasta	SPATA31D4	chr9	81923428	81939998
SPATA31D4_chr9_81923428_81939998	0/0	t0037	2170	1	1	0	0	0	0	copy fasta	SPATA31D4	chr9	81923428	81939998
SPATA31E1_chr9_87877877_87893903	1/1	t0001	94	451	96	80	209	16	48	copy fasta	SPATA31E1	chr9	87877877	87893903
SPATA31E1_chr9_87877877_87893903	0/0	t0002	94	3	2	0	1	0	0	copy fasta	SPATA31E1	chr9	87877877	87893903
SPATA31F1_chr9_34718053_34734488	0/1	t0001	241	183	11	31	106	11	23	copy fasta	SPATA31F1	chr9	34718053	34734488
SPATA31F1_chr9_34718053_34734488	1/0	t0002	241	151	39	36	61	5	9	copy fasta	SPATA31F1	chr9	34718053	34734488
SPATA31F1_chr9_34718053_34734488	0/0	t0003	241	70	5	16	34	2	13	copy fasta	SPATA31F1	chr9	34718053	34734488
SPATA31F1_chr9_34718053_34734488	0/0	t0004	241	41	36	3	1	0	1	copy fasta	SPATA31F1	chr9	34718053	34734488