JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SPATA31F1_chr9_34718053_34734488	0/0	t0005	241	3	3	0	0	0	0	copy fasta	SPATA31F1	chr9	34718053	34734488
SPATA31F3_chr9_34884066_34900764	1/1	t0001	341	433	92	76	204	15	44	copy fasta	SPATA31F3	chr9	34884066	34900764
SPATA31F3_chr9_34884066_34900764	0/0	t0002	341	1	0	0	0	1	0	copy fasta	SPATA31F3	chr9	34884066	34900764
SPATA32_chr17_45249393_45267094	1/1	t0001	112	413	96	68	195	14	38	copy fasta	SPATA32	chr17	45249393	45267094
SPATA32_chr17_45249393_45267094	0/0	t0002	112	1	0	0	1	0	0	copy fasta	SPATA32	chr17	45249393	45267094
SPATA33_chr16_89652836_89675458	0/0	t0001	1038	97	28	15	43	3	8	copy fasta	SPATA33	chr16	89652836	89675458
SPATA33_chr16_89652836_89675458	0/0	t0002	1038	79	29	10	27	1	12	copy fasta	SPATA33	chr16	89652836	89675458
SPATA33_chr16_89652836_89675458	0/0	t0003	1038	68	14	28	6	11	9	copy fasta	SPATA33	chr16	89652836	89675458
SPATA33_chr16_89652836_89675458	0/0	t0004	1038	61	0	0	58	0	3	copy fasta	SPATA33	chr16	89652836	89675458
SPATA33_chr16_89652836_89675458	0/1	t0005	1038	42	0	9	27	1	4	copy fasta	SPATA33	chr16	89652836	89675458
SPATA33_chr16_89652836_89675458	0/0	t0006	1038	32	12	7	1	2	10	copy fasta	SPATA33	chr16	89652836	89675458
SPATA33_chr16_89652836_89675458	0/0	t0007	1038	10	0	0	10	0	0	copy fasta	SPATA33	chr16	89652836	89675458
SPATA33_chr16_89652836_89675458	1/0	t0008	1038	8	5	2	0	0	0	copy fasta	SPATA33	chr16	89652836	89675458
SPATA33_chr16_89652836_89675458	0/0	t0009	1038	4	4	0	0	0	0	copy fasta	SPATA33	chr16	89652836	89675458
SPATA33_chr16_89652836_89675458	0/0	t0010	1038	2	2	0	0	0	0	copy fasta	SPATA33	chr16	89652836	89675458
SPATA33_chr16_89652836_89675458	0/0	t0011	1038	2	2	0	0	0	0	copy fasta	SPATA33	chr16	89652836	89675458
SPATA33_chr16_89652836_89675458	0/0	t0012	1038	2	0	0	2	0	0	copy fasta	SPATA33	chr16	89652836	89675458
SPATA33_chr16_89652836_89675458	0/0	t0013	1038	1	0	1	0	0	0	copy fasta	SPATA33	chr16	89652836	89675458
SPATA33_chr16_89652836_89675458	0/0	t0014	1038	1	0	0	0	0	1	copy fasta	SPATA33	chr16	89652836	89675458
SPATA33_chr16_89652836_89675458	0/0	t0015	1038	1	0	0	1	0	0	copy fasta	SPATA33	chr16	89652836	89675458
SPATA33_chr16_89652836_89675458	0/0	t0016	1038	1	1	0	0	0	0	copy fasta	SPATA33	chr16	89652836	89675458
SPATA33_chr16_89652836_89675458	0/0	t0017	1038	1	1	0	0	0	0	copy fasta	SPATA33	chr16	89652836	89675458
SPATA33_chr16_89652836_89675458	0/0	t0018	1038	1	1	0	0	0	0	copy fasta	SPATA33	chr16	89652836	89675458
SPATA33_chr16_89652836_89675458	0/0	t0019	1038	1	0	0	1	0	0	copy fasta	SPATA33	chr16	89652836	89675458
SPATA33_chr16_89652836_89675458	0/0	t0020	1038	1	0	0	1	0	0	copy fasta	SPATA33	chr16	89652836	89675458
SPATA33_chr16_89652836_89675458	0/0	t0021	1038	1	0	0	1	0	0	copy fasta	SPATA33	chr16	89652836	89675458
SPATA33_chr16_89652836_89675458	0/0	t0022	1038	1	0	0	1	0	0	copy fasta	SPATA33	chr16	89652836	89675458
SPATA33_chr16_89652836_89675458	0/0	t0023	1038	1	0	0	1	0	0	copy fasta	SPATA33	chr16	89652836	89675458
SPATA33_chr16_89652836_89675458	0/0	t0024	1038	1	0	0	0	0	1	copy fasta	SPATA33	chr16	89652836	89675458
SPATA33_chr16_89652836_89675458	0/0	t0025	1038	1	0	0	1	0	0	copy fasta	SPATA33	chr16	89652836	89675458
SPATA33_chr16_89652836_89675458	0/0	t0026	1038	1	0	0	1	0	0	copy fasta	SPATA33	chr16	89652836	89675458
SPATA33_chr16_89652836_89675458	0/0	t0027	1038	1	1	0	0	0	0	copy fasta	SPATA33	chr16	89652836	89675458
SPATA3_chr2_230991121_231013040	0/0	t0001	1051	155	23	27	79	10	16	copy fasta	SPATA3	chr2	230991121	231013040
SPATA3_chr2_230991121_231013040	0/0	t0002	1051	146	35	19	74	5	13	copy fasta	SPATA3	chr2	230991121	231013040
SPATA3_chr2_230991121_231013040	0/1	t0003	1051	90	2	23	53	1	10	copy fasta	SPATA3	chr2	230991121	231013040
SPATA3_chr2_230991121_231013040	0/0	t0004	1051	13	12	1	0	0	0	copy fasta	SPATA3	chr2	230991121	231013040
SPATA3_chr2_230991121_231013040	0/0	t0005	1051	9	1	4	3	0	1	copy fasta	SPATA3	chr2	230991121	231013040
SPATA3_chr2_230991121_231013040	1/0	t0006	1051	7	0	2	0	0	4	copy fasta	SPATA3	chr2	230991121	231013040
SPATA3_chr2_230991121_231013040	0/0	t0007	1051	3	3	0	0	0	0	copy fasta	SPATA3	chr2	230991121	231013040
SPATA3_chr2_230991121_231013040	0/0	t0008	1051	2	2	0	0	0	0	copy fasta	SPATA3	chr2	230991121	231013040
SPATA3_chr2_230991121_231013040	0/0	t0009	1051	2	2	0	0	0	0	copy fasta	SPATA3	chr2	230991121	231013040
SPATA3_chr2_230991121_231013040	0/0	t0010	1051	2	2	0	0	0	0	copy fasta	SPATA3	chr2	230991121	231013040
SPATA3_chr2_230991121_231013040	0/0	t0011	1051	1	0	0	0	0	1	copy fasta	SPATA3	chr2	230991121	231013040
SPATA3_chr2_230991121_231013040	0/0	t0012	1051	1	1	0	0	0	0	copy fasta	SPATA3	chr2	230991121	231013040
SPATA3_chr2_230991121_231013040	0/0	t0013	1116	1	0	0	0	0	1	copy fasta	SPATA3	chr2	230991121	231013040
SPATA3_chr2_230991121_231013040	0/0	t0014	1051	1	0	0	1	0	0	copy fasta	SPATA3	chr2	230991121	231013040
SPATA3_chr2_230991121_231013040	0/0	t0015	1051	1	1	0	0	0	0	copy fasta	SPATA3	chr2	230991121	231013040
SPATA3_chr2_230991121_231013040	0/0	t0016	1051	1	1	0	0	0	0	copy fasta	SPATA3	chr2	230991121	231013040
SPATA3_chr2_230991121_231013040	0/0	t0017	1051	1	1	0	0	0	0	copy fasta	SPATA3	chr2	230991121	231013040
SPATA45_chr1_212825141_212852649	1/1	t0001	210	389	92	62	178	16	39	copy fasta	SPATA45	chr1	212825141	212852649