JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SPATA45_chr1_212825141_212852649	0/0	t0002	71	11	1	2	5	0	3	copy fasta	SPATA45	chr1	212825141	212852649
SPATA45_chr1_212825141_212852649	0/0	t0003	210	2	1	0	1	0	0	copy fasta	SPATA45	chr1	212825141	212852649
SPATA46_chr1_162368203_162381854	0/0	t0001	910	167	5	43	99	4	16	copy fasta	SPATA46	chr1	162368203	162381854
SPATA46_chr1_162368203_162381854	0/0	t0002	910	137	42	15	60	7	13	copy fasta	SPATA46	chr1	162368203	162381854
SPATA46_chr1_162368203_162381854	0/0	t0003	910	100	15	18	53	2	12	copy fasta	SPATA46	chr1	162368203	162381854
SPATA46_chr1_162368203_162381854	0/0	t0004	910	16	12	0	4	0	0	copy fasta	SPATA46	chr1	162368203	162381854
SPATA46_chr1_162368203_162381854	0/0	t0005	910	8	0	4	0	0	4	copy fasta	SPATA46	chr1	162368203	162381854
SPATA46_chr1_162368203_162381854	0/0	t0006	910	8	8	0	0	0	0	copy fasta	SPATA46	chr1	162368203	162381854
SPATA46_chr1_162368203_162381854	0/0	t0007	910	7	0	0	7	0	0	copy fasta	SPATA46	chr1	162368203	162381854
SPATA46_chr1_162368203_162381854	0/1	t0008	910	7	3	0	0	1	2	copy fasta	SPATA46	chr1	162368203	162381854
SPATA46_chr1_162368203_162381854	0/0	t0009	910	6	5	1	0	0	0	copy fasta	SPATA46	chr1	162368203	162381854
SPATA46_chr1_162368203_162381854	0/0	t0010	910	5	0	0	3	0	2	copy fasta	SPATA46	chr1	162368203	162381854
SPATA46_chr1_162368203_162381854	0/0	t0011	910	5	5	0	0	0	0	copy fasta	SPATA46	chr1	162368203	162381854
SPATA46_chr1_162368203_162381854	0/0	t0012	910	2	0	1	1	0	0	copy fasta	SPATA46	chr1	162368203	162381854
SPATA46_chr1_162368203_162381854	0/0	t0013	910	2	2	0	0	0	0	copy fasta	SPATA46	chr1	162368203	162381854
SPATA46_chr1_162368203_162381854	0/0	t0014	910	2	2	0	0	0	0	copy fasta	SPATA46	chr1	162368203	162381854
SPATA46_chr1_162368203_162381854	0/0	t0015	910	1	0	0	1	0	0	copy fasta	SPATA46	chr1	162368203	162381854
SPATA46_chr1_162368203_162381854	0/0	t0016	910	1	0	1	0	0	0	copy fasta	SPATA46	chr1	162368203	162381854
SPATA46_chr1_162368203_162381854	0/0	t0017	910	1	1	0	0	0	0	copy fasta	SPATA46	chr1	162368203	162381854
SPATA46_chr1_162368203_162381854	1/0	t0018	910	1	0	0	0	0	0	copy fasta	SPATA46	chr1	162368203	162381854
SPATA46_chr1_162368203_162381854	0/0	t0019	910	1	0	0	0	0	1	copy fasta	SPATA46	chr1	162368203	162381854
SPATA46_chr1_162368203_162381854	0/0	t0020	910	1	0	1	0	0	0	copy fasta	SPATA46	chr1	162368203	162381854
SPATA48_chr7_50090883_50164256	1/1	t0001	291	309	84	62	98	13	50	copy fasta	SPATA48	chr7	50090883	50164256
SPATA48_chr7_50090883_50164256	0/0	t0002	291	11	1	7	0	3	0	copy fasta	SPATA48	chr7	50090883	50164256
SPATA48_chr7_50090883_50164256	0/0	t0003	291	5	5	0	0	0	0	copy fasta	SPATA48	chr7	50090883	50164256
SPATA48_chr7_50090883_50164256	0/0	t0004	291	2	1	1	0	0	0	copy fasta	SPATA48	chr7	50090883	50164256
SPATA48_chr7_50090883_50164256	0/0	t0005	291	1	1	0	0	0	0	copy fasta	SPATA48	chr7	50090883	50164256
SPATA4_chr4_176179579_176200585	1/1	t0001	225	449	85	82	218	18	44	copy fasta	SPATA4	chr4	176179579	176200585
SPATA4_chr4_176179579_176200585	0/0	t0002	225	6	6	0	0	0	0	copy fasta	SPATA4	chr4	176179579	176200585
SPATA4_chr4_176179579_176200585	0/0	t0003	225	1	1	0	0	0	0	copy fasta	SPATA4	chr4	176179579	176200585
SPATA5L1_chr15_45397336_45426415	0/0	t0001	300	220	26	35	144	3	12	copy fasta	SPATA5L1	chr15	45397336	45426415
SPATA5L1_chr15_45397336_45426415	1/1	t0002	300	157	60	31	33	5	26	copy fasta	SPATA5L1	chr15	45397336	45426415
SPATA5L1_chr15_45397336_45426415	0/0	t0003	300	6	5	1	0	0	0	copy fasta	SPATA5L1	chr15	45397336	45426415
SPATA5L1_chr15_45397336_45426415	0/0	t0004	300	3	0	1	0	0	2	copy fasta	SPATA5L1	chr15	45397336	45426415
SPATA5L1_chr15_45397336_45426415	0/0	t0005	300	2	0	0	2	0	0	copy fasta	SPATA5L1	chr15	45397336	45426415
SPATA5L1_chr15_45397336_45426415	0/0	t0006	300	1	0	0	1	0	0	copy fasta	SPATA5L1	chr15	45397336	45426415
SPATA5L1_chr15_45397336_45426415	0/0	t0007	300	1	1	0	0	0	0	copy fasta	SPATA5L1	chr15	45397336	45426415
SPATA5_chr4_122918078_123324433	0/0	t0001	5433	74	9	16	32	6	11	copy fasta	SPATA5	chr4	122918078	123324433
SPATA5_chr4_122918078_123324433	1/0	t0002	5435	64	12	6	34	5	6	copy fasta	SPATA5	chr4	122918078	123324433
SPATA5_chr4_122918078_123324433	0/0	t0003	5434	11	3	3	3	0	2	copy fasta	SPATA5	chr4	122918078	123324433
SPATA5_chr4_122918078_123324433	0/0	t0004	5434	6	3	0	2	1	0	copy fasta	SPATA5	chr4	122918078	123324433
SPATA5_chr4_122918078_123324433	0/0	t0005	5436	5	0	0	4	0	1	copy fasta	SPATA5	chr4	122918078	123324433
SPATA5_chr4_122918078_123324433	0/1	t0006	5432	4	2	1	0	0	0	copy fasta	SPATA5	chr4	122918078	123324433
SPATA5_chr4_122918078_123324433	0/0	t0007	5435	4	1	2	1	0	0	copy fasta	SPATA5	chr4	122918078	123324433
SPATA5_chr4_122918078_123324433	0/0	t0008	5436	3	0	0	3	0	0	copy fasta	SPATA5	chr4	122918078	123324433
SPATA5_chr4_122918078_123324433	0/0	t0009	5437	3	1	2	0	0	0	copy fasta	SPATA5	chr4	122918078	123324433
SPATA5_chr4_122918078_123324433	0/0	t0010	5434	3	3	0	0	0	0	copy fasta	SPATA5	chr4	122918078	123324433
SPATA5_chr4_122918078_123324433	0/0	t0011	5432	3	3	0	0	0	0	copy fasta	SPATA5	chr4	122918078	123324433
SPATA5_chr4_122918078_123324433	0/0	t0012	5435	3	2	1	0	0	0	copy fasta	SPATA5	chr4	122918078	123324433
SPATA5_chr4_122918078_123324433	0/0	t0013	5436	3	2	0	0	0	1	copy fasta	SPATA5	chr4	122918078	123324433