JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SPATA5_chr4_122918078_123324433	0/0	t0014	5435	2	2	0	0	0	0	copy fasta	SPATA5	chr4	122918078	123324433
SPATA5_chr4_122918078_123324433	0/0	t0015	5432	2	2	0	0	0	0	copy fasta	SPATA5	chr4	122918078	123324433
SPATA5_chr4_122918078_123324433	0/0	t0016	5433	2	0	0	2	0	0	copy fasta	SPATA5	chr4	122918078	123324433
SPATA5_chr4_122918078_123324433	0/0	t0017	5436	2	2	0	0	0	0	copy fasta	SPATA5	chr4	122918078	123324433
SPATA5_chr4_122918078_123324433	0/0	t0018	5433	2	2	0	0	0	0	copy fasta	SPATA5	chr4	122918078	123324433
SPATA5_chr4_122918078_123324433	0/0	t0019	5432	2	2	0	0	0	0	copy fasta	SPATA5	chr4	122918078	123324433
SPATA5_chr4_122918078_123324433	0/0	t0020	5433	2	0	0	2	0	0	copy fasta	SPATA5	chr4	122918078	123324433
SPATA5_chr4_122918078_123324433	0/0	t0021	5433	2	1	1	0	0	0	copy fasta	SPATA5	chr4	122918078	123324433
SPATA5_chr4_122918078_123324433	0/0	t0022	5437	2	0	0	1	0	1	copy fasta	SPATA5	chr4	122918078	123324433
SPATA5_chr4_122918078_123324433	0/0	t0023	5434	2	2	0	0	0	0	copy fasta	SPATA5	chr4	122918078	123324433
SPATA5_chr4_122918078_123324433	0/0	t0024	5437	2	0	0	0	0	2	copy fasta	SPATA5	chr4	122918078	123324433
SPATA5_chr4_122918078_123324433	0/0	t0025	5435	2	0	1	0	0	1	copy fasta	SPATA5	chr4	122918078	123324433
SPATA5_chr4_122918078_123324433	0/0	t0026	5437	2	0	2	0	0	0	copy fasta	SPATA5	chr4	122918078	123324433
SPATA5_chr4_122918078_123324433	0/0	t0027	5436	2	1	1	0	0	0	copy fasta	SPATA5	chr4	122918078	123324433
SPATA5_chr4_122918078_123324433	0/0	t0028	5435	1	0	0	1	0	0	copy fasta	SPATA5	chr4	122918078	123324433
SPATA5_chr4_122918078_123324433	0/0	t0029	5433	1	1	0	0	0	0	copy fasta	SPATA5	chr4	122918078	123324433
SPATA5_chr4_122918078_123324433	0/0	t0030	5433	1	1	0	0	0	0	copy fasta	SPATA5	chr4	122918078	123324433
SPATA5_chr4_122918078_123324433	0/0	t0031	5435	1	1	0	0	0	0	copy fasta	SPATA5	chr4	122918078	123324433
SPATA5_chr4_122918078_123324433	0/0	t0032	5435	1	1	0	0	0	0	copy fasta	SPATA5	chr4	122918078	123324433
SPATA5_chr4_122918078_123324433	0/0	t0033	5435	1	1	0	0	0	0	copy fasta	SPATA5	chr4	122918078	123324433
SPATA5_chr4_122918078_123324433	0/0	t0034	5435	1	1	0	0	0	0	copy fasta	SPATA5	chr4	122918078	123324433
SPATA5_chr4_122918078_123324433	0/0	t0035	5435	1	1	0	0	0	0	copy fasta	SPATA5	chr4	122918078	123324433
SPATA5_chr4_122918078_123324433	0/0	t0036	5434	1	0	1	0	0	0	copy fasta	SPATA5	chr4	122918078	123324433
SPATA5_chr4_122918078_123324433	0/0	t0037	5433	1	0	0	0	1	0	copy fasta	SPATA5	chr4	122918078	123324433
SPATA5_chr4_122918078_123324433	0/0	t0038	5435	1	0	0	0	0	1	copy fasta	SPATA5	chr4	122918078	123324433
SPATA5_chr4_122918078_123324433	0/0	t0039	5433	1	1	0	0	0	0	copy fasta	SPATA5	chr4	122918078	123324433
SPATA5_chr4_122918078_123324433	0/0	t0040	5433	1	0	0	1	0	0	copy fasta	SPATA5	chr4	122918078	123324433
SPATA5_chr4_122918078_123324433	0/0	t0041	5433	1	0	0	1	0	0	copy fasta	SPATA5	chr4	122918078	123324433
SPATA5_chr4_122918078_123324433	0/0	t0042	5434	1	0	1	0	0	0	copy fasta	SPATA5	chr4	122918078	123324433
SPATA5_chr4_122918078_123324433	0/0	t0043	5433	1	1	0	0	0	0	copy fasta	SPATA5	chr4	122918078	123324433
SPATA5_chr4_122918078_123324433	0/0	t0044	5433	1	0	0	1	0	0	copy fasta	SPATA5	chr4	122918078	123324433
SPATA5_chr4_122918078_123324433	0/0	t0045	5433	1	0	1	0	0	0	copy fasta	SPATA5	chr4	122918078	123324433
SPATA5_chr4_122918078_123324433	0/0	t0046	5433	1	0	0	0	0	1	copy fasta	SPATA5	chr4	122918078	123324433
SPATA5_chr4_122918078_123324433	0/0	t0047	5434	1	0	0	1	0	0	copy fasta	SPATA5	chr4	122918078	123324433
SPATA5_chr4_122918078_123324433	0/0	t0048	5433	1	0	0	0	1	0	copy fasta	SPATA5	chr4	122918078	123324433
SPATA5_chr4_122918078_123324433	0/0	t0049	5433	1	1	0	0	0	0	copy fasta	SPATA5	chr4	122918078	123324433
SPATA5_chr4_122918078_123324433	0/0	t0050	5431	1	1	0	0	0	0	copy fasta	SPATA5	chr4	122918078	123324433
SPATA5_chr4_122918078_123324433	0/0	t0051	5433	1	1	0	0	0	0	copy fasta	SPATA5	chr4	122918078	123324433
SPATA5_chr4_122918078_123324433	0/0	t0052	5436	1	1	0	0	0	0	copy fasta	SPATA5	chr4	122918078	123324433
SPATA5_chr4_122918078_123324433	0/0	t0053	5437	1	1	0	0	0	0	copy fasta	SPATA5	chr4	122918078	123324433
SPATA5_chr4_122918078_123324433	0/0	t0054	5432	1	0	0	1	0	0	copy fasta	SPATA5	chr4	122918078	123324433
SPATA5_chr4_122918078_123324433	0/0	t0055	5438	1	0	0	0	0	1	copy fasta	SPATA5	chr4	122918078	123324433
SPATA5_chr4_122918078_123324433	0/0	t0056	5435	1	0	1	0	0	0	copy fasta	SPATA5	chr4	122918078	123324433
SPATA5_chr4_122918078_123324433	0/0	t0057	5435	1	1	0	0	0	0	copy fasta	SPATA5	chr4	122918078	123324433
SPATA5_chr4_122918078_123324433	0/0	t0058	5435	1	0	0	1	0	0	copy fasta	SPATA5	chr4	122918078	123324433
SPATA5_chr4_122918078_123324433	0/0	t0059	5435	1	0	1	0	0	0	copy fasta	SPATA5	chr4	122918078	123324433
SPATA5_chr4_122918078_123324433	0/0	t0060	5422	1	0	0	1	0	0	copy fasta	SPATA5	chr4	122918078	123324433
SPATA5_chr4_122918078_123324433	0/0	t0061	5436	1	0	0	0	0	1	copy fasta	SPATA5	chr4	122918078	123324433
SPATA5_chr4_122918078_123324433	0/0	t0062	5435	1	0	1	0	0	0	copy fasta	SPATA5	chr4	122918078	123324433
SPATA5_chr4_122918078_123324433	0/0	t0063	5435	1	0	0	1	0	0	copy fasta	SPATA5	chr4	122918078	123324433