JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SPATA5_chr4_122918078_123324433	0/0	t0064	5434	1	1	0	0	0	0	copy fasta	SPATA5	chr4	122918078	123324433
SPATA5_chr4_122918078_123324433	0/0	t0065	5434	1	0	1	0	0	0	copy fasta	SPATA5	chr4	122918078	123324433
SPATA5_chr4_122918078_123324433	0/0	t0066	5434	1	1	0	0	0	0	copy fasta	SPATA5	chr4	122918078	123324433
SPATA5_chr4_122918078_123324433	0/0	t0067	5435	1	0	0	1	0	0	copy fasta	SPATA5	chr4	122918078	123324433
SPATA5_chr4_122918078_123324433	0/0	t0068	5436	1	0	1	0	0	0	copy fasta	SPATA5	chr4	122918078	123324433
SPATA5_chr4_122918078_123324433	0/0	t0069	5435	1	1	0	0	0	0	copy fasta	SPATA5	chr4	122918078	123324433
SPATA5_chr4_122918078_123324433	0/0	t0070	5435	1	0	0	0	0	1	copy fasta	SPATA5	chr4	122918078	123324433
SPATA5_chr4_122918078_123324433	0/0	t0071	5436	1	1	0	0	0	0	copy fasta	SPATA5	chr4	122918078	123324433
SPATA5_chr4_122918078_123324433	0/0	t0072	5436	1	0	0	1	0	0	copy fasta	SPATA5	chr4	122918078	123324433
SPATA5_chr4_122918078_123324433	0/0	t0073	5436	1	0	0	1	0	0	copy fasta	SPATA5	chr4	122918078	123324433
SPATA5_chr4_122918078_123324433	0/0	t0074	5433	1	1	0	0	0	0	copy fasta	SPATA5	chr4	122918078	123324433
SPATA5_chr4_122918078_123324433	0/0	t0075	5437	1	1	0	0	0	0	copy fasta	SPATA5	chr4	122918078	123324433
SPATA6L_chr9_4593316_4671480	1/0	t0001	2725	71	18	11	33	1	7	copy fasta	SPATA6L	chr9	4593316	4671480
SPATA6L_chr9_4593316_4671480	0/1	t0002	2745	60	5	17	22	5	10	copy fasta	SPATA6L	chr9	4593316	4671480
SPATA6L_chr9_4593316_4671480	0/0	t0003	2725	34	0	9	23	0	2	copy fasta	SPATA6L	chr9	4593316	4671480
SPATA6L_chr9_4593316_4671480	0/0	t0004	2725	26	0	0	26	0	0	copy fasta	SPATA6L	chr9	4593316	4671480
SPATA6L_chr9_4593316_4671480	0/0	t0005	2729	20	7	8	3	1	1	copy fasta	SPATA6L	chr9	4593316	4671480
SPATA6L_chr9_4593316_4671480	0/0	t0006	2747	17	0	8	6	0	3	copy fasta	SPATA6L	chr9	4593316	4671480
SPATA6L_chr9_4593316_4671480	0/0	t0007	2725	16	0	0	16	0	0	copy fasta	SPATA6L	chr9	4593316	4671480
SPATA6L_chr9_4593316_4671480	0/0	t0008	2725	15	0	2	13	0	0	copy fasta	SPATA6L	chr9	4593316	4671480
SPATA6L_chr9_4593316_4671480	0/0	t0009	2725	15	0	1	14	0	0	copy fasta	SPATA6L	chr9	4593316	4671480
SPATA6L_chr9_4593316_4671480	0/0	t0010	2741	11	9	1	1	0	0	copy fasta	SPATA6L	chr9	4593316	4671480
SPATA6L_chr9_4593316_4671480	0/0	t0011	2749	7	0	2	2	0	3	copy fasta	SPATA6L	chr9	4593316	4671480
SPATA6L_chr9_4593316_4671480	0/0	t0012	2737	7	6	1	0	0	0	copy fasta	SPATA6L	chr9	4593316	4671480
SPATA6L_chr9_4593316_4671480	0/0	t0013	2725	6	4	2	0	0	0	copy fasta	SPATA6L	chr9	4593316	4671480
SPATA6L_chr9_4593316_4671480	0/0	t0014	2729	6	6	0	0	0	0	copy fasta	SPATA6L	chr9	4593316	4671480
SPATA6L_chr9_4593316_4671480	0/0	t0015	2729	6	6	0	0	0	0	copy fasta	SPATA6L	chr9	4593316	4671480
SPATA6L_chr9_4593316_4671480	0/0	t0016	2725	6	0	2	3	0	1	copy fasta	SPATA6L	chr9	4593316	4671480
SPATA6L_chr9_4593316_4671480	0/0	t0017	2745	6	0	1	5	0	0	copy fasta	SPATA6L	chr9	4593316	4671480
SPATA6L_chr9_4593316_4671480	0/0	t0018	2743	5	1	0	3	0	1	copy fasta	SPATA6L	chr9	4593316	4671480
SPATA6L_chr9_4593316_4671480	0/0	t0019	2743	5	5	0	0	0	0	copy fasta	SPATA6L	chr9	4593316	4671480
SPATA6L_chr9_4593316_4671480	0/0	t0020	2741	5	0	2	3	0	0	copy fasta	SPATA6L	chr9	4593316	4671480
SPATA6L_chr9_4593316_4671480	0/0	t0021	2725	4	0	0	4	0	0	copy fasta	SPATA6L	chr9	4593316	4671480
SPATA6L_chr9_4593316_4671480	0/0	t0022	2729	3	3	0	0	0	0	copy fasta	SPATA6L	chr9	4593316	4671480
SPATA6L_chr9_4593316_4671480	0/0	t0023	2741	3	3	0	0	0	0	copy fasta	SPATA6L	chr9	4593316	4671480
SPATA6L_chr9_4593316_4671480	0/0	t0024	2725	3	3	0	0	0	0	copy fasta	SPATA6L	chr9	4593316	4671480
SPATA6L_chr9_4593316_4671480	0/0	t0025	2725	3	2	1	0	0	0	copy fasta	SPATA6L	chr9	4593316	4671480
SPATA6L_chr9_4593316_4671480	0/0	t0026	2741	3	0	0	2	0	1	copy fasta	SPATA6L	chr9	4593316	4671480
SPATA6L_chr9_4593316_4671480	0/0	t0027	2725	2	2	0	0	0	0	copy fasta	SPATA6L	chr9	4593316	4671480
SPATA6L_chr9_4593316_4671480	0/0	t0028	2725	2	2	0	0	0	0	copy fasta	SPATA6L	chr9	4593316	4671480
SPATA6L_chr9_4593316_4671480	0/0	t0029	2747	2	0	2	0	0	0	copy fasta	SPATA6L	chr9	4593316	4671480
SPATA6L_chr9_4593316_4671480	0/0	t0030	2745	2	0	0	0	0	2	copy fasta	SPATA6L	chr9	4593316	4671480
SPATA6L_chr9_4593316_4671480	0/0	t0031	2739	2	2	0	0	0	0	copy fasta	SPATA6L	chr9	4593316	4671480
SPATA6L_chr9_4593316_4671480	0/0	t0032	2725	2	2	0	0	0	0	copy fasta	SPATA6L	chr9	4593316	4671480
SPATA6L_chr9_4593316_4671480	0/0	t0033	2725	2	2	0	0	0	0	copy fasta	SPATA6L	chr9	4593316	4671480
SPATA6L_chr9_4593316_4671480	0/0	t0034	2725	2	0	2	0	0	0	copy fasta	SPATA6L	chr9	4593316	4671480
SPATA6L_chr9_4593316_4671480	0/0	t0035	2747	2	0	0	1	0	1	copy fasta	SPATA6L	chr9	4593316	4671480
SPATA6L_chr9_4593316_4671480	0/0	t0036	2737	1	1	0	0	0	0	copy fasta	SPATA6L	chr9	4593316	4671480
SPATA6L_chr9_4593316_4671480	0/0	t0037	2743	1	1	0	0	0	0	copy fasta	SPATA6L	chr9	4593316	4671480
SPATA6L_chr9_4593316_4671480	0/0	t0038	2725	1	1	0	0	0	0	copy fasta	SPATA6L	chr9	4593316	4671480