JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SPATA6L_chr9_4593316_4671480	0/0	t0039	2725	1	0	0	1	0	0	copy fasta	SPATA6L	chr9	4593316	4671480
SPATA6L_chr9_4593316_4671480	0/0	t0040	2725	1	0	0	1	0	0	copy fasta	SPATA6L	chr9	4593316	4671480
SPATA6L_chr9_4593316_4671480	0/0	t0041	2725	1	0	0	1	0	0	copy fasta	SPATA6L	chr9	4593316	4671480
SPATA6L_chr9_4593316_4671480	0/0	t0042	2747	1	1	0	0	0	0	copy fasta	SPATA6L	chr9	4593316	4671480
SPATA6L_chr9_4593316_4671480	0/0	t0043	2745	1	0	0	0	1	0	copy fasta	SPATA6L	chr9	4593316	4671480
SPATA6L_chr9_4593316_4671480	0/0	t0044	2741	1	0	0	0	0	1	copy fasta	SPATA6L	chr9	4593316	4671480
SPATA6L_chr9_4593316_4671480	0/0	t0045	2741	1	0	0	1	0	0	copy fasta	SPATA6L	chr9	4593316	4671480
SPATA6L_chr9_4593316_4671480	0/0	t0046	2739	1	0	0	1	0	0	copy fasta	SPATA6L	chr9	4593316	4671480
SPATA6L_chr9_4593316_4671480	0/0	t0047	2725	1	1	0	0	0	0	copy fasta	SPATA6L	chr9	4593316	4671480
SPATA6L_chr9_4593316_4671480	0/0	t0048	2725	1	0	1	0	0	0	copy fasta	SPATA6L	chr9	4593316	4671480
SPATA6L_chr9_4593316_4671480	0/0	t0049	2754	1	0	1	0	0	0	copy fasta	SPATA6L	chr9	4593316	4671480
SPATA6L_chr9_4593316_4671480	0/0	t0050	2748	1	0	0	0	0	1	copy fasta	SPATA6L	chr9	4593316	4671480
SPATA6L_chr9_4593316_4671480	0/0	t0051	2746	1	0	1	0	0	0	copy fasta	SPATA6L	chr9	4593316	4671480
SPATA6L_chr9_4593316_4671480	0/0	t0052	2729	1	1	0	0	0	0	copy fasta	SPATA6L	chr9	4593316	4671480
SPATA6L_chr9_4593316_4671480	0/0	t0053	2745	1	0	0	1	0	0	copy fasta	SPATA6L	chr9	4593316	4671480
SPATA6L_chr9_4593316_4671480	0/0	t0054	2741	1	1	0	0	0	0	copy fasta	SPATA6L	chr9	4593316	4671480
SPATA6L_chr9_4593316_4671480	0/0	t0055	2725	1	0	1	0	0	0	copy fasta	SPATA6L	chr9	4593316	4671480
SPATA6L_chr9_4593316_4671480	0/0	t0056	2725	1	0	0	1	0	0	copy fasta	SPATA6L	chr9	4593316	4671480
SPATA6L_chr9_4593316_4671480	0/0	t0057	2725	1	0	0	1	0	0	copy fasta	SPATA6L	chr9	4593316	4671480
SPATA6L_chr9_4593316_4671480	0/0	t0058	2725	1	1	0	0	0	0	copy fasta	SPATA6L	chr9	4593316	4671480
SPATA6L_chr9_4593316_4671480	0/0	t0059	2759	1	0	0	0	0	1	copy fasta	SPATA6L	chr9	4593316	4671480
SPATA6L_chr9_4593316_4671480	0/0	t0060	2749	1	0	0	0	0	1	copy fasta	SPATA6L	chr9	4593316	4671480
SPATA6L_chr9_4593316_4671480	0/0	t0061	2741	1	0	0	1	0	0	copy fasta	SPATA6L	chr9	4593316	4671480
SPATA6L_chr9_4593316_4671480	0/0	t0062	2739	1	0	0	1	0	0	copy fasta	SPATA6L	chr9	4593316	4671480
SPATA6_chr1_48290373_48477204	0/0	t0001	3535	52	1	11	34	4	2	copy fasta	SPATA6	chr1	48290373	48477204
SPATA6_chr1_48290373_48477204	0/0	t0002	3526	44	4	13	23	1	3	copy fasta	SPATA6	chr1	48290373	48477204
SPATA6_chr1_48290373_48477204	1/0	t0003	3537	42	9	5	23	2	2	copy fasta	SPATA6	chr1	48290373	48477204
SPATA6_chr1_48290373_48477204	0/0	t0004	3531	35	1	1	32	0	1	copy fasta	SPATA6	chr1	48290373	48477204
SPATA6_chr1_48290373_48477204	0/1	t0005	3537	34	1	6	16	2	8	copy fasta	SPATA6	chr1	48290373	48477204
SPATA6_chr1_48290373_48477204	0/0	t0006	3531	15	6	5	0	2	2	copy fasta	SPATA6	chr1	48290373	48477204
SPATA6_chr1_48290373_48477204	0/0	t0007	3545	11	0	5	1	3	2	copy fasta	SPATA6	chr1	48290373	48477204
SPATA6_chr1_48290373_48477204	0/0	t0008	3533	9	8	1	0	0	0	copy fasta	SPATA6	chr1	48290373	48477204
SPATA6_chr1_48290373_48477204	0/0	t0009	3535	9	3	3	3	0	0	copy fasta	SPATA6	chr1	48290373	48477204
SPATA6_chr1_48290373_48477204	0/0	t0010	3539	6	1	3	2	0	0	copy fasta	SPATA6	chr1	48290373	48477204
SPATA6_chr1_48290373_48477204	0/0	t0011	3537	6	6	0	0	0	0	copy fasta	SPATA6	chr1	48290373	48477204
SPATA6_chr1_48290373_48477204	0/0	t0012	3533	5	0	0	5	0	0	copy fasta	SPATA6	chr1	48290373	48477204
SPATA6_chr1_48290373_48477204	0/0	t0013	3532	4	4	0	0	0	0	copy fasta	SPATA6	chr1	48290373	48477204
SPATA6_chr1_48290373_48477204	0/0	t0014	3529	4	4	0	0	0	0	copy fasta	SPATA6	chr1	48290373	48477204
SPATA6_chr1_48290373_48477204	0/0	t0015	3551	3	0	2	0	0	1	copy fasta	SPATA6	chr1	48290373	48477204
SPATA6_chr1_48290373_48477204	0/0	t0016	3549	3	2	0	1	0	0	copy fasta	SPATA6	chr1	48290373	48477204
SPATA6_chr1_48290373_48477204	0/0	t0017	3531	3	3	0	0	0	0	copy fasta	SPATA6	chr1	48290373	48477204
SPATA6_chr1_48290373_48477204	0/0	t0018	3533	3	3	0	0	0	0	copy fasta	SPATA6	chr1	48290373	48477204
SPATA6_chr1_48290373_48477204	0/0	t0019	3539	2	0	2	0	0	0	copy fasta	SPATA6	chr1	48290373	48477204
SPATA6_chr1_48290373_48477204	0/0	t0020	3535	2	0	0	2	0	0	copy fasta	SPATA6	chr1	48290373	48477204
SPATA6_chr1_48290373_48477204	0/0	t0021	3528	2	1	0	0	0	1	copy fasta	SPATA6	chr1	48290373	48477204
SPATA6_chr1_48290373_48477204	0/0	t0022	3537	2	1	0	0	0	1	copy fasta	SPATA6	chr1	48290373	48477204
SPATA6_chr1_48290373_48477204	0/0	t0023	3535	2	2	0	0	0	0	copy fasta	SPATA6	chr1	48290373	48477204
SPATA6_chr1_48290373_48477204	0/0	t0024	3524	2	0	0	2	0	0	copy fasta	SPATA6	chr1	48290373	48477204
SPATA6_chr1_48290373_48477204	0/0	t0025	3539	2	2	0	0	0	0	copy fasta	SPATA6	chr1	48290373	48477204
SPATA6_chr1_48290373_48477204	0/0	t0026	3549	2	2	0	0	0	0	copy fasta	SPATA6	chr1	48290373	48477204