JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SPATA6_chr1_48290373_48477204	0/0	t0027	3537	1	0	0	0	1	0	copy fasta	SPATA6	chr1	48290373	48477204
SPATA6_chr1_48290373_48477204	0/0	t0028	3541	1	0	1	0	0	0	copy fasta	SPATA6	chr1	48290373	48477204
SPATA6_chr1_48290373_48477204	0/0	t0029	3537	1	0	0	0	1	0	copy fasta	SPATA6	chr1	48290373	48477204
SPATA6_chr1_48290373_48477204	0/0	t0030	3533	1	0	0	1	0	0	copy fasta	SPATA6	chr1	48290373	48477204
SPATA6_chr1_48290373_48477204	0/0	t0031	3531	1	0	0	0	0	1	copy fasta	SPATA6	chr1	48290373	48477204
SPATA6_chr1_48290373_48477204	0/0	t0032	3537	1	0	0	1	0	0	copy fasta	SPATA6	chr1	48290373	48477204
SPATA6_chr1_48290373_48477204	0/0	t0033	3537	1	0	1	0	0	0	copy fasta	SPATA6	chr1	48290373	48477204
SPATA6_chr1_48290373_48477204	0/0	t0034	3529	1	1	0	0	0	0	copy fasta	SPATA6	chr1	48290373	48477204
SPATA6_chr1_48290373_48477204	0/0	t0035	3526	1	0	1	0	0	0	copy fasta	SPATA6	chr1	48290373	48477204
SPATA6_chr1_48290373_48477204	0/0	t0036	3557	1	0	0	1	0	0	copy fasta	SPATA6	chr1	48290373	48477204
SPATA6_chr1_48290373_48477204	0/0	t0037	3547	1	0	0	0	0	1	copy fasta	SPATA6	chr1	48290373	48477204
SPATA6_chr1_48290373_48477204	0/0	t0038	3545	1	0	0	1	0	0	copy fasta	SPATA6	chr1	48290373	48477204
SPATA6_chr1_48290373_48477204	0/0	t0039	3541	1	0	0	0	0	1	copy fasta	SPATA6	chr1	48290373	48477204
SPATA6_chr1_48290373_48477204	0/0	t0040	3526	1	0	1	0	0	0	copy fasta	SPATA6	chr1	48290373	48477204
SPATA6_chr1_48290373_48477204	0/0	t0041	3529	1	0	1	0	0	0	copy fasta	SPATA6	chr1	48290373	48477204
SPATA6_chr1_48290373_48477204	0/0	t0042	3527	1	1	0	0	0	0	copy fasta	SPATA6	chr1	48290373	48477204
SPATA6_chr1_48290373_48477204	0/0	t0043	3551	1	1	0	0	0	0	copy fasta	SPATA6	chr1	48290373	48477204
SPATA6_chr1_48290373_48477204	0/0	t0044	3535	1	1	0	0	0	0	copy fasta	SPATA6	chr1	48290373	48477204
SPATA7_chr14_88380657_88443460	0/1	t0001	201	349	78	56	168	14	32	copy fasta	SPATA7	chr14	88380657	88443460
SPATA7_chr14_88380657_88443460	1/0	t0002	201	11	10	0	0	0	0	copy fasta	SPATA7	chr14	88380657	88443460
SPATA7_chr14_88380657_88443460	0/0	t0003	201	2	2	0	0	0	0	copy fasta	SPATA7	chr14	88380657	88443460
SPATA7_chr14_88380657_88443460	0/0	t0004	201	2	2	0	0	0	0	copy fasta	SPATA7	chr14	88380657	88443460
SPATA9_chr5_95653315_95687991	1/0	t0001	446	239	60	54	84	12	28	copy fasta	SPATA9	chr5	95653315	95687991
SPATA9_chr5_95653315_95687991	0/1	t0002	772	83	8	12	44	6	12	copy fasta	SPATA9	chr5	95653315	95687991
SPATA9_chr5_95653315_95687991	0/0	t0003	773	14	0	2	10	0	2	copy fasta	SPATA9	chr5	95653315	95687991
SPATA9_chr5_95653315_95687991	0/0	t0004	773	12	7	2	1	0	2	copy fasta	SPATA9	chr5	95653315	95687991
SPATA9_chr5_95653315_95687991	0/0	t0005	446	8	8	0	0	0	0	copy fasta	SPATA9	chr5	95653315	95687991
SPATA9_chr5_95653315_95687991	0/0	t0006	774	4	1	1	2	0	0	copy fasta	SPATA9	chr5	95653315	95687991
SPATA9_chr5_95653315_95687991	0/0	t0007	772	3	2	1	0	0	0	copy fasta	SPATA9	chr5	95653315	95687991
SPATA9_chr5_95653315_95687991	0/0	t0008	771	3	0	0	3	0	0	copy fasta	SPATA9	chr5	95653315	95687991
SPATA9_chr5_95653315_95687991	0/0	t0009	772	2	0	0	2	0	0	copy fasta	SPATA9	chr5	95653315	95687991
SPATA9_chr5_95653315_95687991	0/0	t0010	446	1	0	0	0	0	1	copy fasta	SPATA9	chr5	95653315	95687991
SPATA9_chr5_95653315_95687991	0/0	t0011	446	1	1	0	0	0	0	copy fasta	SPATA9	chr5	95653315	95687991
SPATA9_chr5_95653315_95687991	0/0	t0012	446	1	1	0	0	0	0	copy fasta	SPATA9	chr5	95653315	95687991
SPATA9_chr5_95653315_95687991	0/0	t0013	774	1	0	0	0	0	1	copy fasta	SPATA9	chr5	95653315	95687991
SPATA9_chr5_95653315_95687991	0/0	t0014	773	1	1	0	0	0	0	copy fasta	SPATA9	chr5	95653315	95687991
SPATA9_chr5_95653315_95687991	0/0	t0015	773	1	1	0	0	0	0	copy fasta	SPATA9	chr5	95653315	95687991
SPATA9_chr5_95653315_95687991	0/0	t0016	772	1	0	0	1	0	0	copy fasta	SPATA9	chr5	95653315	95687991
SPATA9_chr5_95653315_95687991	0/0	t0017	773	1	1	0	0	0	0	copy fasta	SPATA9	chr5	95653315	95687991
SPATA9_chr5_95653315_95687991	0/0	t0018	765	1	1	0	0	0	0	copy fasta	SPATA9	chr5	95653315	95687991
SPATA9_chr5_95653315_95687991	0/0	t0019	771	1	0	0	1	0	0	copy fasta	SPATA9	chr5	95653315	95687991
SPATA9_chr5_95653315_95687991	0/0	t0020	769	1	0	0	1	0	0	copy fasta	SPATA9	chr5	95653315	95687991
SPATA9_chr5_95653315_95687991	0/0	t0021	772	1	0	0	1	0	0	copy fasta	SPATA9	chr5	95653315	95687991
SPATC1L_chr21_46156160_46189459	0/0	t0001	1282	63	6	22	18	5	12	copy fasta	SPATC1L	chr21	46156160	46189459
SPATC1L_chr21_46156160_46189459	0/0	t0002	1282	49	3	10	28	3	5	copy fasta	SPATC1L	chr21	46156160	46189459
SPATC1L_chr21_46156160_46189459	0/0	t0003	1058	19	18	1	0	0	0	copy fasta	SPATC1L	chr21	46156160	46189459
SPATC1L_chr21_46156160_46189459	0/0	t0004	1282	18	1	7	5	2	3	copy fasta	SPATC1L	chr21	46156160	46189459
SPATC1L_chr21_46156160_46189459	0/0	t0005	1006	10	3	2	0	0	5	copy fasta	SPATC1L	chr21	46156160	46189459
SPATC1L_chr21_46156160_46189459	0/0	t0006	1006	7	2	5	0	0	0	copy fasta	SPATC1L	chr21	46156160	46189459
SPATC1L_chr21_46156160_46189459	0/1	t0007	1265	7	1	4	0	0	1	copy fasta	SPATC1L	chr21	46156160	46189459