JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SPATC1L_chr21_46156160_46189459	0/0	t0008	1006	7	1	4	0	1	1	copy fasta	SPATC1L	chr21	46156160	46189459
SPATC1L_chr21_46156160_46189459	0/0	t0009	1006	6	5	1	0	0	0	copy fasta	SPATC1L	chr21	46156160	46189459
SPATC1L_chr21_46156160_46189459	0/0	t0010	1037	6	5	1	0	0	0	copy fasta	SPATC1L	chr21	46156160	46189459
SPATC1L_chr21_46156160_46189459	0/0	t0011	1008	6	6	0	0	0	0	copy fasta	SPATC1L	chr21	46156160	46189459
SPATC1L_chr21_46156160_46189459	0/0	t0012	1282	4	2	1	1	0	0	copy fasta	SPATC1L	chr21	46156160	46189459
SPATC1L_chr21_46156160_46189459	0/0	t0013	1283	4	1	0	2	0	1	copy fasta	SPATC1L	chr21	46156160	46189459
SPATC1L_chr21_46156160_46189459	0/0	t0014	1059	3	2	1	0	0	0	copy fasta	SPATC1L	chr21	46156160	46189459
SPATC1L_chr21_46156160_46189459	0/0	t0015	1283	3	1	0	2	0	0	copy fasta	SPATC1L	chr21	46156160	46189459
SPATC1L_chr21_46156160_46189459	0/0	t0016	1003	3	0	2	0	1	0	copy fasta	SPATC1L	chr21	46156160	46189459
SPATC1L_chr21_46156160_46189459	0/0	t0017	1009	3	3	0	0	0	0	copy fasta	SPATC1L	chr21	46156160	46189459
SPATC1L_chr21_46156160_46189459	0/0	t0018	1008	3	0	2	0	1	0	copy fasta	SPATC1L	chr21	46156160	46189459
SPATC1L_chr21_46156160_46189459	0/0	t0019	1044	2	0	0	1	0	1	copy fasta	SPATC1L	chr21	46156160	46189459
SPATC1L_chr21_46156160_46189459	0/0	t0020	1044	2	0	0	0	0	2	copy fasta	SPATC1L	chr21	46156160	46189459
SPATC1L_chr21_46156160_46189459	0/0	t0021	1282	2	2	0	0	0	0	copy fasta	SPATC1L	chr21	46156160	46189459
SPATC1L_chr21_46156160_46189459	0/0	t0022	2110	2	2	0	0	0	0	copy fasta	SPATC1L	chr21	46156160	46189459
SPATC1L_chr21_46156160_46189459	0/0	t0023	1008	2	0	0	0	0	2	copy fasta	SPATC1L	chr21	46156160	46189459
SPATC1L_chr21_46156160_46189459	0/0	t0024	1282	1	0	0	1	0	0	copy fasta	SPATC1L	chr21	46156160	46189459
SPATC1L_chr21_46156160_46189459	0/0	t0025	1006	1	0	0	0	1	0	copy fasta	SPATC1L	chr21	46156160	46189459
SPATC1L_chr21_46156160_46189459	0/0	t0026	1059	1	1	0	0	0	0	copy fasta	SPATC1L	chr21	46156160	46189459
SPATC1L_chr21_46156160_46189459	0/0	t0027	1059	1	1	0	0	0	0	copy fasta	SPATC1L	chr21	46156160	46189459
SPATC1L_chr21_46156160_46189459	0/0	t0028	1007	1	0	1	0	0	0	copy fasta	SPATC1L	chr21	46156160	46189459
SPATC1L_chr21_46156160_46189459	0/0	t0029	1282	1	1	0	0	0	0	copy fasta	SPATC1L	chr21	46156160	46189459
SPATC1L_chr21_46156160_46189459	0/0	t0030	1283	1	1	0	0	0	0	copy fasta	SPATC1L	chr21	46156160	46189459
SPATC1L_chr21_46156160_46189459	0/0	t0031	1283	1	0	1	0	0	0	copy fasta	SPATC1L	chr21	46156160	46189459
SPATC1L_chr21_46156160_46189459	0/0	t0032	1283	1	0	1	0	0	0	copy fasta	SPATC1L	chr21	46156160	46189459
SPATC1L_chr21_46156160_46189459	0/0	t0033	1283	1	0	0	1	0	0	copy fasta	SPATC1L	chr21	46156160	46189459
SPATC1L_chr21_46156160_46189459	0/0	t0034	1283	1	0	0	1	0	0	copy fasta	SPATC1L	chr21	46156160	46189459
SPATC1L_chr21_46156160_46189459	0/0	t0035	1283	1	0	0	1	0	0	copy fasta	SPATC1L	chr21	46156160	46189459
SPATC1L_chr21_46156160_46189459	0/0	t0036	1283	1	0	0	0	0	1	copy fasta	SPATC1L	chr21	46156160	46189459
SPATC1L_chr21_46156160_46189459	0/0	t0037	1266	1	0	1	0	0	0	copy fasta	SPATC1L	chr21	46156160	46189459
SPATC1L_chr21_46156160_46189459	0/0	t0038	1282	1	0	0	0	1	0	copy fasta	SPATC1L	chr21	46156160	46189459
SPATC1L_chr21_46156160_46189459	0/0	t0039	1037	1	1	0	0	0	0	copy fasta	SPATC1L	chr21	46156160	46189459
SPATC1L_chr21_46156160_46189459	0/0	t0040	1003	1	0	1	0	0	0	copy fasta	SPATC1L	chr21	46156160	46189459
SPATC1L_chr21_46156160_46189459	0/0	t0041	1283	1	0	0	0	1	0	copy fasta	SPATC1L	chr21	46156160	46189459
SPATC1L_chr21_46156160_46189459	0/0	t0042	1283	1	0	0	1	0	0	copy fasta	SPATC1L	chr21	46156160	46189459
SPATC1L_chr21_46156160_46189459	0/0	t0043	2375	1	1	0	0	0	0	copy fasta	SPATC1L	chr21	46156160	46189459
SPATS1_chr6_44337650_44385179	0/1	t0001	3235	98	14	26	44	6	7	copy fasta	SPATS1	chr6	44337650	44385179
SPATS1_chr6_44337650_44385179	0/0	t0002	3232	85	10	10	47	3	15	copy fasta	SPATS1	chr6	44337650	44385179
SPATS1_chr6_44337650_44385179	0/0	t0003	3229	52	0	12	36	1	3	copy fasta	SPATS1	chr6	44337650	44385179
SPATS1_chr6_44337650_44385179	0/0	t0004	3232	31	17	1	13	0	0	copy fasta	SPATS1	chr6	44337650	44385179
SPATS1_chr6_44337650_44385179	0/0	t0005	3236	28	10	7	7	3	1	copy fasta	SPATS1	chr6	44337650	44385179
SPATS1_chr6_44337650_44385179	0/0	t0006	3233	12	0	1	9	0	2	copy fasta	SPATS1	chr6	44337650	44385179
SPATS1_chr6_44337650_44385179	0/0	t0007	3234	7	1	2	1	1	2	copy fasta	SPATS1	chr6	44337650	44385179
SPATS1_chr6_44337650_44385179	0/0	t0008	3230	6	0	1	5	0	0	copy fasta	SPATS1	chr6	44337650	44385179
SPATS1_chr6_44337650_44385179	0/0	t0009	3233	6	4	0	2	0	0	copy fasta	SPATS1	chr6	44337650	44385179
SPATS1_chr6_44337650_44385179	0/0	t0010	3234	5	5	0	0	0	0	copy fasta	SPATS1	chr6	44337650	44385179
SPATS1_chr6_44337650_44385179	0/0	t0011	3233	5	5	0	0	0	0	copy fasta	SPATS1	chr6	44337650	44385179
SPATS1_chr6_44337650_44385179	1/0	t0012	3236	5	4	0	0	0	0	copy fasta	SPATS1	chr6	44337650	44385179
SPATS1_chr6_44337650_44385179	0/0	t0013	3231	4	0	0	3	0	1	copy fasta	SPATS1	chr6	44337650	44385179
SPATS1_chr6_44337650_44385179	0/0	t0014	3229	3	0	0	3	0	0	copy fasta	SPATS1	chr6	44337650	44385179