JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SPATS1_chr6_44337650_44385179	0/0	t0015	3231	3	3	0	0	0	0	copy fasta	SPATS1	chr6	44337650	44385179
SPATS1_chr6_44337650_44385179	0/0	t0016	3236	3	0	1	0	0	2	copy fasta	SPATS1	chr6	44337650	44385179
SPATS1_chr6_44337650_44385179	0/0	t0017	3231	3	3	0	0	0	0	copy fasta	SPATS1	chr6	44337650	44385179
SPATS1_chr6_44337650_44385179	0/0	t0018	3232	2	0	0	2	0	0	copy fasta	SPATS1	chr6	44337650	44385179
SPATS1_chr6_44337650_44385179	0/0	t0019	3237	2	0	0	1	0	1	copy fasta	SPATS1	chr6	44337650	44385179
SPATS1_chr6_44337650_44385179	0/0	t0020	3233	2	2	0	0	0	0	copy fasta	SPATS1	chr6	44337650	44385179
SPATS1_chr6_44337650_44385179	0/0	t0021	3232	2	2	0	0	0	0	copy fasta	SPATS1	chr6	44337650	44385179
SPATS1_chr6_44337650_44385179	0/0	t0022	3235	2	2	0	0	0	0	copy fasta	SPATS1	chr6	44337650	44385179
SPATS1_chr6_44337650_44385179	0/0	t0023	3232	2	2	0	0	0	0	copy fasta	SPATS1	chr6	44337650	44385179
SPATS1_chr6_44337650_44385179	0/0	t0024	3233	1	0	1	0	0	0	copy fasta	SPATS1	chr6	44337650	44385179
SPATS1_chr6_44337650_44385179	0/0	t0025	3232	1	0	0	0	0	1	copy fasta	SPATS1	chr6	44337650	44385179
SPATS1_chr6_44337650_44385179	0/0	t0026	3232	1	0	0	1	0	0	copy fasta	SPATS1	chr6	44337650	44385179
SPATS1_chr6_44337650_44385179	0/0	t0027	3229	1	0	0	1	0	0	copy fasta	SPATS1	chr6	44337650	44385179
SPATS1_chr6_44337650_44385179	0/0	t0028	3230	1	0	1	0	0	0	copy fasta	SPATS1	chr6	44337650	44385179
SPATS1_chr6_44337650_44385179	0/0	t0029	3230	1	0	0	1	0	0	copy fasta	SPATS1	chr6	44337650	44385179
SPATS1_chr6_44337650_44385179	0/0	t0030	3230	1	0	1	0	0	0	copy fasta	SPATS1	chr6	44337650	44385179
SPATS1_chr6_44337650_44385179	0/0	t0031	3229	1	0	0	1	0	0	copy fasta	SPATS1	chr6	44337650	44385179
SPATS1_chr6_44337650_44385179	0/0	t0032	3232	1	0	0	0	0	1	copy fasta	SPATS1	chr6	44337650	44385179
SPATS1_chr6_44337650_44385179	0/0	t0033	3232	1	0	0	1	0	0	copy fasta	SPATS1	chr6	44337650	44385179
SPATS1_chr6_44337650_44385179	0/0	t0034	3233	1	0	0	1	0	0	copy fasta	SPATS1	chr6	44337650	44385179
SPATS1_chr6_44337650_44385179	0/0	t0035	3237	1	0	0	1	0	0	copy fasta	SPATS1	chr6	44337650	44385179
SPATS1_chr6_44337650_44385179	0/0	t0036	3231	1	1	0	0	0	0	copy fasta	SPATS1	chr6	44337650	44385179
SPATS1_chr6_44337650_44385179	0/0	t0037	3234	1	1	0	0	0	0	copy fasta	SPATS1	chr6	44337650	44385179
SPATS1_chr6_44337650_44385179	0/0	t0038	3230	1	1	0	0	0	0	copy fasta	SPATS1	chr6	44337650	44385179
SPATS1_chr6_44337650_44385179	0/0	t0039	3231	1	0	1	0	0	0	copy fasta	SPATS1	chr6	44337650	44385179
SPATS1_chr6_44337650_44385179	0/0	t0040	3235	1	0	1	0	0	0	copy fasta	SPATS1	chr6	44337650	44385179
SPATS1_chr6_44337650_44385179	0/0	t0041	3233	1	1	0	0	0	0	copy fasta	SPATS1	chr6	44337650	44385179
SPATS1_chr6_44337650_44385179	0/0	t0042	3232	1	1	0	0	0	0	copy fasta	SPATS1	chr6	44337650	44385179
SPATS1_chr6_44337650_44385179	0/0	t0043	3233	1	1	0	0	0	0	copy fasta	SPATS1	chr6	44337650	44385179
SPATS1_chr6_44337650_44385179	0/0	t0044	3232	1	1	0	0	0	0	copy fasta	SPATS1	chr6	44337650	44385179
SPATS1_chr6_44337650_44385179	0/0	t0045	3230	1	1	0	0	0	0	copy fasta	SPATS1	chr6	44337650	44385179
SPATS1_chr6_44337650_44385179	0/0	t0046	3220	1	1	0	0	0	0	copy fasta	SPATS1	chr6	44337650	44385179
SPATS1_chr6_44337650_44385179	0/0	t0047	3233	1	1	0	0	0	0	copy fasta	SPATS1	chr6	44337650	44385179
SPATS2L_chr2_200301693_200487264	0/0	t0001	4534	32	0	9	18	0	5	copy fasta	SPATS2L	chr2	200301693	200487264
SPATS2L_chr2_200301693_200487264	0/0	t0002	4534	31	0	3	21	0	7	copy fasta	SPATS2L	chr2	200301693	200487264
SPATS2L_chr2_200301693_200487264	0/0	t0003	4536	18	3	3	10	0	2	copy fasta	SPATS2L	chr2	200301693	200487264
SPATS2L_chr2_200301693_200487264	0/0	t0004	4536	14	1	1	11	0	1	copy fasta	SPATS2L	chr2	200301693	200487264
SPATS2L_chr2_200301693_200487264	0/0	t0005	4534	12	0	1	11	0	0	copy fasta	SPATS2L	chr2	200301693	200487264
SPATS2L_chr2_200301693_200487264	0/1	t0006	4491	12	4	0	6	1	0	copy fasta	SPATS2L	chr2	200301693	200487264
SPATS2L_chr2_200301693_200487264	0/0	t0007	4535	11	0	5	4	0	2	copy fasta	SPATS2L	chr2	200301693	200487264
SPATS2L_chr2_200301693_200487264	0/0	t0008	4536	11	3	2	4	0	2	copy fasta	SPATS2L	chr2	200301693	200487264
SPATS2L_chr2_200301693_200487264	0/0	t0009	4530	9	1	6	2	0	0	copy fasta	SPATS2L	chr2	200301693	200487264
SPATS2L_chr2_200301693_200487264	1/0	t0010	4536	9	8	0	0	0	0	copy fasta	SPATS2L	chr2	200301693	200487264
SPATS2L_chr2_200301693_200487264	0/0	t0011	4534	8	0	0	5	0	3	copy fasta	SPATS2L	chr2	200301693	200487264
SPATS2L_chr2_200301693_200487264	0/0	t0012	4537	8	8	0	0	0	0	copy fasta	SPATS2L	chr2	200301693	200487264
SPATS2L_chr2_200301693_200487264	0/0	t0013	4536	8	8	0	0	0	0	copy fasta	SPATS2L	chr2	200301693	200487264
SPATS2L_chr2_200301693_200487264	0/0	t0014	4536	6	2	4	0	0	0	copy fasta	SPATS2L	chr2	200301693	200487264
SPATS2L_chr2_200301693_200487264	0/0	t0015	4534	5	0	2	0	1	2	copy fasta	SPATS2L	chr2	200301693	200487264
SPATS2L_chr2_200301693_200487264	0/0	t0016	4489	5	5	0	0	0	0	copy fasta	SPATS2L	chr2	200301693	200487264
SPATS2L_chr2_200301693_200487264	0/0	t0017	4535	5	4	1	0	0	0	copy fasta	SPATS2L	chr2	200301693	200487264