Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
BICDL2_chr16_3022682_3041944	0/0	t0005	506	4	1	0	2	0	1	copy fasta	BICDL2	chr16	3022682	3041944
BICDL2_chr16_3022682_3041944	0/0	t0006	504	1	1	0	0	0	0	copy fasta	BICDL2	chr16	3022682	3041944
BICDL2_chr16_3022682_3041944	0/0	t0007	505	1	1	0	0	0	0	copy fasta	BICDL2	chr16	3022682	3041944
BICDL2_chr16_3022682_3041944	0/0	t0008	505	1	0	0	1	0	0	copy fasta	BICDL2	chr16	3022682	3041944
BICDL2_chr16_3022682_3041944	0/0	t0009	496	1	0	1	0	0	0	copy fasta	BICDL2	chr16	3022682	3041944
BICDL2_chr16_3022682_3041944	0/0	t0010	505	1	1	0	0	0	0	copy fasta	BICDL2	chr16	3022682	3041944
BICRAL_chr6_42777052_42873556	1/1	t0001	3262	166	22	29	95	7	11	copy fasta	BICRAL	chr6	42777052	42873556
BICRAL_chr6_42777052_42873556	0/0	t0002	3262	32	10	7	9	1	5	copy fasta	BICRAL	chr6	42777052	42873556
BICRAL_chr6_42777052_42873556	0/0	t0003	3260	20	12	6	1	0	1	copy fasta	BICRAL	chr6	42777052	42873556
BICRAL_chr6_42777052_42873556	0/0	t0004	3261	16	15	1	0	0	0	copy fasta	BICRAL	chr6	42777052	42873556
BICRAL_chr6_42777052_42873556	0/0	t0005	3261	5	0	0	3	0	2	copy fasta	BICRAL	chr6	42777052	42873556
BICRAL_chr6_42777052_42873556	0/0	t0006	3260	3	3	0	0	0	0	copy fasta	BICRAL	chr6	42777052	42873556
BICRAL_chr6_42777052_42873556	0/0	t0007	3260	2	2	0	0	0	0	copy fasta	BICRAL	chr6	42777052	42873556
BICRAL_chr6_42777052_42873556	0/0	t0008	3262	2	2	0	0	0	0	copy fasta	BICRAL	chr6	42777052	42873556
BICRAL_chr6_42777052_42873556	0/0	t0009	3260	2	0	0	0	2	0	copy fasta	BICRAL	chr6	42777052	42873556
BICRAL_chr6_42777052_42873556	0/0	t0010	3249	2	0	2	0	0	0	copy fasta	BICRAL	chr6	42777052	42873556
BICRAL_chr6_42777052_42873556	0/0	t0011	3248	2	1	1	0	0	0	copy fasta	BICRAL	chr6	42777052	42873556
BICRAL_chr6_42777052_42873556	0/0	t0012	3260	2	2	0	0	0	0	copy fasta	BICRAL	chr6	42777052	42873556
BICRAL_chr6_42777052_42873556	0/0	t0013	3262	1	0	0	1	0	0	copy fasta	BICRAL	chr6	42777052	42873556
BICRAL_chr6_42777052_42873556	0/0	t0014	3262	1	0	0	1	0	0	copy fasta	BICRAL	chr6	42777052	42873556
BICRAL_chr6_42777052_42873556	0/0	t0015	3262	1	0	0	1	0	0	copy fasta	BICRAL	chr6	42777052	42873556
BICRAL_chr6_42777052_42873556	0/0	t0016	3262	1	0	0	1	0	0	copy fasta	BICRAL	chr6	42777052	42873556
BICRAL_chr6_42777052_42873556	0/0	t0017	3260	1	1	0	0	0	0	copy fasta	BICRAL	chr6	42777052	42873556
BICRAL_chr6_42777052_42873556	0/0	t0018	3261	1	1	0	0	0	0	copy fasta	BICRAL	chr6	42777052	42873556
BICRAL_chr6_42777052_42873556	0/0	t0019	3260	1	1	0	0	0	0	copy fasta	BICRAL	chr6	42777052	42873556
BICRAL_chr6_42777052_42873556	0/0	t0020	3262	1	0	0	1	0	0	copy fasta	BICRAL	chr6	42777052	42873556
BICRAL_chr6_42777052_42873556	0/0	t0021	3262	1	1	0	0	0	0	copy fasta	BICRAL	chr6	42777052	42873556
BICRAL_chr6_42777052_42873556	0/0	t0022	3262	1	0	0	0	0	1	copy fasta	BICRAL	chr6	42777052	42873556
BICRAL_chr6_42777052_42873556	0/0	t0023	3248	1	1	0	0	0	0	copy fasta	BICRAL	chr6	42777052	42873556
BICRAL_chr6_42777052_42873556	0/0	t0024	3248	1	1	0	0	0	0	copy fasta	BICRAL	chr6	42777052	42873556
BICRAL_chr6_42777052_42873556	0/0	t0025	3249	1	0	0	1	0	0	copy fasta	BICRAL	chr6	42777052	42873556
BICRAL_chr6_42777052_42873556	0/0	t0026	3248	1	1	0	0	0	0	copy fasta	BICRAL	chr6	42777052	42873556
BICRAL_chr6_42777052_42873556	0/0	t0027	3261	1	1	0	0	0	0	copy fasta	BICRAL	chr6	42777052	42873556
BICRAL_chr6_42777052_42873556	0/0	t0028	3262	1	1	0	0	0	0	copy fasta	BICRAL	chr6	42777052	42873556
BICRA_chr19_47604134_47708277	0/0	t0001	1003	143	24	36	57	5	21	copy fasta	BICRA	chr19	47604134	47708277
BICRA_chr19_47604134_47708277	0/0	t0002	1003	70	16	9	36	3	6	copy fasta	BICRA	chr19	47604134	47708277
BICRA_chr19_47604134_47708277	1/1	t0003	1005	37	7	10	6	4	8	copy fasta	BICRA	chr19	47604134	47708277
BICRA_chr19_47604134_47708277	0/0	t0004	1003	31	28	3	0	0	0	copy fasta	BICRA	chr19	47604134	47708277
BICRA_chr19_47604134_47708277	0/0	t0005	1003	13	7	3	0	0	3	copy fasta	BICRA	chr19	47604134	47708277
BICRA_chr19_47604134_47708277	0/0	t0006	1005	9	9	0	0	0	0	copy fasta	BICRA	chr19	47604134	47708277
BICRA_chr19_47604134_47708277	0/0	t0007	1003	3	0	0	3	0	0	copy fasta	BICRA	chr19	47604134	47708277
BICRA_chr19_47604134_47708277	0/0	t0008	1003	1	1	0	0	0	0	copy fasta	BICRA	chr19	47604134	47708277
BICRA_chr19_47604134_47708277	0/0	t0009	1003	1	0	1	0	0	0	copy fasta	BICRA	chr19	47604134	47708277
BICRA_chr19_47604134_47708277	0/0	t0010	1003	1	1	0	0	0	0	copy fasta	BICRA	chr19	47604134	47708277
BICRA_chr19_47604134_47708277	0/0	t0011	1003	1	0	1	0	0	0	copy fasta	BICRA	chr19	47604134	47708277
BICRA_chr19_47604134_47708277	0/0	t0012	1003	1	0	1	0	0	0	copy fasta	BICRA	chr19	47604134	47708277
BICRA_chr19_47604134_47708277	0/0	t0013	1003	1	1	0	0	0	0	copy fasta	BICRA	chr19	47604134	47708277
BID_chr22_17729138_17779469	1/1	t0001	1590	291	67	54	120	14	34	copy fasta	BID	chr22	17729138	17779469
BID_chr22_17729138_17779469	0/0	t0002	1590	27	4	4	17	0	2	copy fasta	BID	chr22	17729138	17779469
BID_chr22_17729138_17779469	0/0	t0003	1590	12	12	0	0	0	0	copy fasta	BID	chr22	17729138	17779469