JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SPATS2L_chr2_200301693_200487264	0/0	t0018	4536	5	1	0	3	0	1	copy fasta	SPATS2L	chr2	200301693	200487264
SPATS2L_chr2_200301693_200487264	0/0	t0019	4535	4	4	0	0	0	0	copy fasta	SPATS2L	chr2	200301693	200487264
SPATS2L_chr2_200301693_200487264	0/0	t0020	4536	4	0	1	2	0	1	copy fasta	SPATS2L	chr2	200301693	200487264
SPATS2L_chr2_200301693_200487264	0/0	t0021	4536	4	4	0	0	0	0	copy fasta	SPATS2L	chr2	200301693	200487264
SPATS2L_chr2_200301693_200487264	0/0	t0022	4534	3	0	0	3	0	0	copy fasta	SPATS2L	chr2	200301693	200487264
SPATS2L_chr2_200301693_200487264	0/0	t0023	4534	3	0	2	1	0	0	copy fasta	SPATS2L	chr2	200301693	200487264
SPATS2L_chr2_200301693_200487264	0/0	t0024	4534	3	0	0	3	0	0	copy fasta	SPATS2L	chr2	200301693	200487264
SPATS2L_chr2_200301693_200487264	0/0	t0025	4533	2	0	1	1	0	0	copy fasta	SPATS2L	chr2	200301693	200487264
SPATS2L_chr2_200301693_200487264	0/0	t0026	4534	2	0	0	2	0	0	copy fasta	SPATS2L	chr2	200301693	200487264
SPATS2L_chr2_200301693_200487264	0/0	t0027	4535	2	0	0	2	0	0	copy fasta	SPATS2L	chr2	200301693	200487264
SPATS2L_chr2_200301693_200487264	0/0	t0028	4534	2	0	0	2	0	0	copy fasta	SPATS2L	chr2	200301693	200487264
SPATS2L_chr2_200301693_200487264	0/0	t0029	4530	2	0	0	2	0	0	copy fasta	SPATS2L	chr2	200301693	200487264
SPATS2L_chr2_200301693_200487264	0/0	t0030	4537	2	2	0	0	0	0	copy fasta	SPATS2L	chr2	200301693	200487264
SPATS2L_chr2_200301693_200487264	0/0	t0031	4536	2	0	1	0	0	1	copy fasta	SPATS2L	chr2	200301693	200487264
SPATS2L_chr2_200301693_200487264	0/0	t0032	4536	2	2	0	0	0	0	copy fasta	SPATS2L	chr2	200301693	200487264
SPATS2L_chr2_200301693_200487264	0/0	t0033	4536	2	0	0	2	0	0	copy fasta	SPATS2L	chr2	200301693	200487264
SPATS2L_chr2_200301693_200487264	0/0	t0034	4537	2	2	0	0	0	0	copy fasta	SPATS2L	chr2	200301693	200487264
SPATS2L_chr2_200301693_200487264	0/0	t0035	4536	2	0	0	0	0	2	copy fasta	SPATS2L	chr2	200301693	200487264
SPATS2L_chr2_200301693_200487264	0/0	t0036	4536	2	0	1	0	1	0	copy fasta	SPATS2L	chr2	200301693	200487264
SPATS2L_chr2_200301693_200487264	0/0	t0037	4536	2	0	1	0	1	0	copy fasta	SPATS2L	chr2	200301693	200487264
SPATS2L_chr2_200301693_200487264	0/0	t0038	4534	1	0	0	1	0	0	copy fasta	SPATS2L	chr2	200301693	200487264
SPATS2L_chr2_200301693_200487264	0/0	t0039	4534	1	0	0	1	0	0	copy fasta	SPATS2L	chr2	200301693	200487264
SPATS2L_chr2_200301693_200487264	0/0	t0040	4534	1	0	0	0	0	1	copy fasta	SPATS2L	chr2	200301693	200487264
SPATS2L_chr2_200301693_200487264	0/0	t0041	4533	1	1	0	0	0	0	copy fasta	SPATS2L	chr2	200301693	200487264
SPATS2L_chr2_200301693_200487264	0/0	t0042	4534	1	0	0	1	0	0	copy fasta	SPATS2L	chr2	200301693	200487264
SPATS2L_chr2_200301693_200487264	0/0	t0043	4534	1	0	0	1	0	0	copy fasta	SPATS2L	chr2	200301693	200487264
SPATS2L_chr2_200301693_200487264	0/0	t0044	4534	1	0	0	1	0	0	copy fasta	SPATS2L	chr2	200301693	200487264
SPATS2L_chr2_200301693_200487264	0/0	t0045	4489	1	1	0	0	0	0	copy fasta	SPATS2L	chr2	200301693	200487264
SPATS2L_chr2_200301693_200487264	0/0	t0046	4534	1	0	0	1	0	0	copy fasta	SPATS2L	chr2	200301693	200487264
SPATS2L_chr2_200301693_200487264	0/0	t0047	4534	1	0	0	1	0	0	copy fasta	SPATS2L	chr2	200301693	200487264
SPATS2L_chr2_200301693_200487264	0/0	t0048	4535	1	0	1	0	0	0	copy fasta	SPATS2L	chr2	200301693	200487264
SPATS2L_chr2_200301693_200487264	0/0	t0049	4533	1	0	0	0	0	1	copy fasta	SPATS2L	chr2	200301693	200487264
SPATS2L_chr2_200301693_200487264	0/0	t0050	4534	1	0	0	0	0	1	copy fasta	SPATS2L	chr2	200301693	200487264
SPATS2L_chr2_200301693_200487264	0/0	t0051	4489	1	0	0	0	0	1	copy fasta	SPATS2L	chr2	200301693	200487264
SPATS2L_chr2_200301693_200487264	0/0	t0052	4530	1	0	1	0	0	0	copy fasta	SPATS2L	chr2	200301693	200487264
SPATS2L_chr2_200301693_200487264	0/0	t0053	4530	1	0	1	0	0	0	copy fasta	SPATS2L	chr2	200301693	200487264
SPATS2L_chr2_200301693_200487264	0/0	t0054	4534	1	0	0	0	0	1	copy fasta	SPATS2L	chr2	200301693	200487264
SPATS2L_chr2_200301693_200487264	0/0	t0055	4533	1	0	0	1	0	0	copy fasta	SPATS2L	chr2	200301693	200487264
SPATS2L_chr2_200301693_200487264	0/0	t0056	4534	1	0	0	1	0	0	copy fasta	SPATS2L	chr2	200301693	200487264
SPATS2L_chr2_200301693_200487264	0/0	t0057	4534	1	0	0	0	1	0	copy fasta	SPATS2L	chr2	200301693	200487264
SPATS2L_chr2_200301693_200487264	0/0	t0058	4537	1	1	0	0	0	0	copy fasta	SPATS2L	chr2	200301693	200487264
SPATS2L_chr2_200301693_200487264	0/0	t0059	4536	1	1	0	0	0	0	copy fasta	SPATS2L	chr2	200301693	200487264
SPATS2L_chr2_200301693_200487264	0/0	t0060	4536	1	0	0	1	0	0	copy fasta	SPATS2L	chr2	200301693	200487264
SPATS2L_chr2_200301693_200487264	0/0	t0061	4536	1	0	0	1	0	0	copy fasta	SPATS2L	chr2	200301693	200487264
SPATS2L_chr2_200301693_200487264	0/0	t0062	4536	1	1	0	0	0	0	copy fasta	SPATS2L	chr2	200301693	200487264
SPATS2L_chr2_200301693_200487264	0/0	t0063	4537	1	1	0	0	0	0	copy fasta	SPATS2L	chr2	200301693	200487264
SPATS2L_chr2_200301693_200487264	0/0	t0064	4536	1	1	0	0	0	0	copy fasta	SPATS2L	chr2	200301693	200487264
SPATS2L_chr2_200301693_200487264	0/0	t0065	4536	1	0	0	0	0	1	copy fasta	SPATS2L	chr2	200301693	200487264
SPATS2L_chr2_200301693_200487264	0/0	t0066	4535	1	0	0	1	0	0	copy fasta	SPATS2L	chr2	200301693	200487264
SPATS2L_chr2_200301693_200487264	0/0	t0067	4535	1	0	0	1	0	0	copy fasta	SPATS2L	chr2	200301693	200487264