JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SPATS2L_chr2_200301693_200487264	0/0	t0068	4536	1	1	0	0	0	0	copy fasta	SPATS2L	chr2	200301693	200487264
SPATS2L_chr2_200301693_200487264	0/0	t0069	4535	1	0	0	0	0	1	copy fasta	SPATS2L	chr2	200301693	200487264
SPATS2L_chr2_200301693_200487264	0/0	t0070	4491	1	1	0	0	0	0	copy fasta	SPATS2L	chr2	200301693	200487264
SPATS2L_chr2_200301693_200487264	0/0	t0071	4536	1	1	0	0	0	0	copy fasta	SPATS2L	chr2	200301693	200487264
SPATS2L_chr2_200301693_200487264	0/0	t0072	4536	1	0	0	0	0	1	copy fasta	SPATS2L	chr2	200301693	200487264
SPATS2L_chr2_200301693_200487264	0/0	t0073	4536	1	0	0	0	0	1	copy fasta	SPATS2L	chr2	200301693	200487264
SPATS2L_chr2_200301693_200487264	0/0	t0074	4535	1	0	0	0	0	1	copy fasta	SPATS2L	chr2	200301693	200487264
SPATS2L_chr2_200301693_200487264	0/0	t0075	4535	1	1	0	0	0	0	copy fasta	SPATS2L	chr2	200301693	200487264
SPATS2L_chr2_200301693_200487264	0/0	t0076	4536	1	0	0	0	1	0	copy fasta	SPATS2L	chr2	200301693	200487264
SPATS2L_chr2_200301693_200487264	0/0	t0077	4535	1	0	1	0	0	0	copy fasta	SPATS2L	chr2	200301693	200487264
SPATS2L_chr2_200301693_200487264	0/0	t0078	4537	1	0	0	1	0	0	copy fasta	SPATS2L	chr2	200301693	200487264
SPATS2L_chr2_200301693_200487264	0/0	t0079	4536	1	0	0	0	0	1	copy fasta	SPATS2L	chr2	200301693	200487264
SPATS2L_chr2_200301693_200487264	0/0	t0080	4536	1	0	0	1	0	0	copy fasta	SPATS2L	chr2	200301693	200487264
SPATS2L_chr2_200301693_200487264	0/0	t0081	4536	1	1	0	0	0	0	copy fasta	SPATS2L	chr2	200301693	200487264
SPATS2_chr12_49362462_49532425	1/1	t0001	1603	101	42	20	17	7	13	copy fasta	SPATS2	chr12	49362462	49532425
SPATS2_chr12_49362462_49532425	0/0	t0002	1603	18	11	5	0	0	2	copy fasta	SPATS2	chr12	49362462	49532425
SPATS2_chr12_49362462_49532425	0/0	t0003	1604	14	11	0	1	0	2	copy fasta	SPATS2	chr12	49362462	49532425
SPATS2_chr12_49362462_49532425	0/0	t0004	1601	7	6	1	0	0	0	copy fasta	SPATS2	chr12	49362462	49532425
SPATS2_chr12_49362462_49532425	0/0	t0005	1604	5	4	1	0	0	0	copy fasta	SPATS2	chr12	49362462	49532425
SPATS2_chr12_49362462_49532425	0/0	t0006	1604	4	4	0	0	0	0	copy fasta	SPATS2	chr12	49362462	49532425
SPATS2_chr12_49362462_49532425	0/0	t0007	1600	2	2	0	0	0	0	copy fasta	SPATS2	chr12	49362462	49532425
SPATS2_chr12_49362462_49532425	0/0	t0008	1604	2	2	0	0	0	0	copy fasta	SPATS2	chr12	49362462	49532425
SPATS2_chr12_49362462_49532425	0/0	t0009	1603	1	0	1	0	0	0	copy fasta	SPATS2	chr12	49362462	49532425
SPATS2_chr12_49362462_49532425	0/0	t0010	1603	1	1	0	0	0	0	copy fasta	SPATS2	chr12	49362462	49532425
SPATS2_chr12_49362462_49532425	0/0	t0011	1604	1	0	0	0	0	1	copy fasta	SPATS2	chr12	49362462	49532425
SPATS2_chr12_49362462_49532425	0/0	t0012	1603	1	1	0	0	0	0	copy fasta	SPATS2	chr12	49362462	49532425
SPATS2_chr12_49362462_49532425	0/0	t0013	1603	1	0	0	0	1	0	copy fasta	SPATS2	chr12	49362462	49532425
SPC24_chr19_11140493_11160782	0/0	t0001	1709	43	0	17	17	5	4	copy fasta	SPC24	chr19	11140493	11160782
SPC24_chr19_11140493_11160782	0/0	t0002	1724	23	3	2	14	0	4	copy fasta	SPC24	chr19	11140493	11160782
SPC24_chr19_11140493_11160782	0/0	t0003	1710	21	1	11	6	0	3	copy fasta	SPC24	chr19	11140493	11160782
SPC24_chr19_11140493_11160782	0/0	t0004	1723	17	2	3	11	0	1	copy fasta	SPC24	chr19	11140493	11160782
SPC24_chr19_11140493_11160782	0/0	t0005	1697	13	4	0	6	2	1	copy fasta	SPC24	chr19	11140493	11160782
SPC24_chr19_11140493_11160782	0/0	t0006	1708	13	0	7	6	0	0	copy fasta	SPC24	chr19	11140493	11160782
SPC24_chr19_11140493_11160782	0/0	t0007	1725	13	0	0	13	0	0	copy fasta	SPC24	chr19	11140493	11160782
SPC24_chr19_11140493_11160782	0/0	t0008	1704	12	0	9	0	0	3	copy fasta	SPC24	chr19	11140493	11160782
SPC24_chr19_11140493_11160782	0/0	t0009	1697	11	10	1	0	0	0	copy fasta	SPC24	chr19	11140493	11160782
SPC24_chr19_11140493_11160782	0/0	t0010	1730	6	0	0	6	0	0	copy fasta	SPC24	chr19	11140493	11160782
SPC24_chr19_11140493_11160782	0/0	t0011	1697	5	5	0	0	0	0	copy fasta	SPC24	chr19	11140493	11160782
SPC24_chr19_11140493_11160782	0/0	t0012	1722	5	4	0	1	0	0	copy fasta	SPC24	chr19	11140493	11160782
SPC24_chr19_11140493_11160782	0/0	t0013	1725	5	0	0	5	0	0	copy fasta	SPC24	chr19	11140493	11160782
SPC24_chr19_11140493_11160782	0/0	t0014	1698	5	4	0	0	0	1	copy fasta	SPC24	chr19	11140493	11160782
SPC24_chr19_11140493_11160782	1/0	t0015	1697	4	0	0	3	0	0	copy fasta	SPC24	chr19	11140493	11160782
SPC24_chr19_11140493_11160782	0/0	t0016	1709	4	1	0	0	1	2	copy fasta	SPC24	chr19	11140493	11160782
SPC24_chr19_11140493_11160782	0/0	t0017	1723	4	0	0	4	0	0	copy fasta	SPC24	chr19	11140493	11160782
SPC24_chr19_11140493_11160782	0/0	t0018	1709	3	0	1	2	0	0	copy fasta	SPC24	chr19	11140493	11160782
SPC24_chr19_11140493_11160782	0/0	t0019	1711	3	0	0	3	0	0	copy fasta	SPC24	chr19	11140493	11160782
SPC24_chr19_11140493_11160782	0/0	t0020	1709	3	0	2	0	1	0	copy fasta	SPC24	chr19	11140493	11160782
SPC24_chr19_11140493_11160782	0/0	t0021	1709	3	0	2	1	0	0	copy fasta	SPC24	chr19	11140493	11160782
SPC24_chr19_11140493_11160782	0/0	t0022	1699	3	0	0	3	0	0	copy fasta	SPC24	chr19	11140493	11160782
SPC24_chr19_11140493_11160782	0/0	t0023	1726	3	0	1	2	0	0	copy fasta	SPC24	chr19	11140493	11160782