JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SPC24_chr19_11140493_11160782	0/0	t0024	1697	2	2	0	0	0	0	copy fasta	SPC24	chr19	11140493	11160782
SPC24_chr19_11140493_11160782	0/0	t0025	1697	2	2	0	0	0	0	copy fasta	SPC24	chr19	11140493	11160782
SPC24_chr19_11140493_11160782	0/0	t0026	1697	2	0	0	0	2	0	copy fasta	SPC24	chr19	11140493	11160782
SPC24_chr19_11140493_11160782	0/0	t0027	1697	2	1	1	0	0	0	copy fasta	SPC24	chr19	11140493	11160782
SPC24_chr19_11140493_11160782	0/0	t0028	1698	2	2	0	0	0	0	copy fasta	SPC24	chr19	11140493	11160782
SPC24_chr19_11140493_11160782	0/0	t0029	1723	2	0	0	2	0	0	copy fasta	SPC24	chr19	11140493	11160782
SPC24_chr19_11140493_11160782	0/0	t0030	1709	2	0	1	0	0	1	copy fasta	SPC24	chr19	11140493	11160782
SPC24_chr19_11140493_11160782	0/0	t0031	1704	2	0	1	0	1	0	copy fasta	SPC24	chr19	11140493	11160782
SPC24_chr19_11140493_11160782	0/0	t0032	1708	2	0	0	1	0	1	copy fasta	SPC24	chr19	11140493	11160782
SPC24_chr19_11140493_11160782	0/1	t0033	1723	2	0	1	0	0	0	copy fasta	SPC24	chr19	11140493	11160782
SPC24_chr19_11140493_11160782	0/0	t0034	1721	2	2	0	0	0	0	copy fasta	SPC24	chr19	11140493	11160782
SPC24_chr19_11140493_11160782	0/0	t0035	1721	2	0	1	0	1	0	copy fasta	SPC24	chr19	11140493	11160782
SPC24_chr19_11140493_11160782	0/0	t0036	1720	2	0	0	2	0	0	copy fasta	SPC24	chr19	11140493	11160782
SPC24_chr19_11140493_11160782	0/0	t0037	1722	2	0	0	2	0	0	copy fasta	SPC24	chr19	11140493	11160782
SPC24_chr19_11140493_11160782	0/0	t0038	1722	2	0	0	2	0	0	copy fasta	SPC24	chr19	11140493	11160782
SPC24_chr19_11140493_11160782	0/0	t0039	1709	2	0	0	0	2	0	copy fasta	SPC24	chr19	11140493	11160782
SPC24_chr19_11140493_11160782	0/0	t0040	1699	2	0	0	2	0	0	copy fasta	SPC24	chr19	11140493	11160782
SPC24_chr19_11140493_11160782	0/0	t0041	1712	2	2	0	0	0	0	copy fasta	SPC24	chr19	11140493	11160782
SPC24_chr19_11140493_11160782	0/0	t0042	1709	2	0	0	1	0	1	copy fasta	SPC24	chr19	11140493	11160782
SPC24_chr19_11140493_11160782	0/0	t0043	1699	2	1	0	1	0	0	copy fasta	SPC24	chr19	11140493	11160782
SPC24_chr19_11140493_11160782	0/0	t0044	1723	2	0	1	1	0	0	copy fasta	SPC24	chr19	11140493	11160782
SPC24_chr19_11140493_11160782	0/0	t0045	1724	2	0	0	2	0	0	copy fasta	SPC24	chr19	11140493	11160782
SPC24_chr19_11140493_11160782	0/0	t0046	1731	2	0	0	2	0	0	copy fasta	SPC24	chr19	11140493	11160782
SPC24_chr19_11140493_11160782	0/0	t0047	1731	2	0	0	2	0	0	copy fasta	SPC24	chr19	11140493	11160782
SPC24_chr19_11140493_11160782	0/0	t0048	1710	2	0	0	2	0	0	copy fasta	SPC24	chr19	11140493	11160782
SPC24_chr19_11140493_11160782	0/0	t0049	1723	2	1	1	0	0	0	copy fasta	SPC24	chr19	11140493	11160782
SPC24_chr19_11140493_11160782	0/0	t0050	1721	2	2	0	0	0	0	copy fasta	SPC24	chr19	11140493	11160782
SPC24_chr19_11140493_11160782	0/0	t0051	1699	2	2	0	0	0	0	copy fasta	SPC24	chr19	11140493	11160782
SPC24_chr19_11140493_11160782	0/0	t0052	1710	2	0	0	0	0	2	copy fasta	SPC24	chr19	11140493	11160782
SPC24_chr19_11140493_11160782	0/0	t0053	1698	2	2	0	0	0	0	copy fasta	SPC24	chr19	11140493	11160782
SPC24_chr19_11140493_11160782	0/0	t0054	1698	2	0	0	2	0	0	copy fasta	SPC24	chr19	11140493	11160782
SPC24_chr19_11140493_11160782	0/0	t0055	1698	2	2	0	0	0	0	copy fasta	SPC24	chr19	11140493	11160782
SPC24_chr19_11140493_11160782	0/0	t0056	1698	2	2	0	0	0	0	copy fasta	SPC24	chr19	11140493	11160782
SPC24_chr19_11140493_11160782	0/0	t0057	1698	2	0	0	2	0	0	copy fasta	SPC24	chr19	11140493	11160782
SPC24_chr19_11140493_11160782	0/0	t0058	1718	2	2	0	0	0	0	copy fasta	SPC24	chr19	11140493	11160782
SPC24_chr19_11140493_11160782	0/0	t0059	1721	2	0	0	0	0	2	copy fasta	SPC24	chr19	11140493	11160782
SPC24_chr19_11140493_11160782	0/0	t0060	1724	2	0	0	2	0	0	copy fasta	SPC24	chr19	11140493	11160782
SPC24_chr19_11140493_11160782	0/0	t0061	1730	2	2	0	0	0	0	copy fasta	SPC24	chr19	11140493	11160782
SPC24_chr19_11140493_11160782	0/0	t0062	1722	1	0	0	1	0	0	copy fasta	SPC24	chr19	11140493	11160782
SPC24_chr19_11140493_11160782	0/0	t0063	1721	1	0	0	1	0	0	copy fasta	SPC24	chr19	11140493	11160782
SPC24_chr19_11140493_11160782	0/0	t0064	1708	1	0	0	1	0	0	copy fasta	SPC24	chr19	11140493	11160782
SPC24_chr19_11140493_11160782	0/0	t0065	1709	1	0	0	1	0	0	copy fasta	SPC24	chr19	11140493	11160782
SPC24_chr19_11140493_11160782	0/0	t0066	1722	1	0	0	1	0	0	copy fasta	SPC24	chr19	11140493	11160782
SPC24_chr19_11140493_11160782	0/0	t0067	1708	1	0	0	1	0	0	copy fasta	SPC24	chr19	11140493	11160782
SPC24_chr19_11140493_11160782	0/0	t0068	1708	1	0	0	1	0	0	copy fasta	SPC24	chr19	11140493	11160782
SPC24_chr19_11140493_11160782	0/0	t0069	1697	1	0	0	1	0	0	copy fasta	SPC24	chr19	11140493	11160782
SPC24_chr19_11140493_11160782	0/0	t0070	1697	1	0	1	0	0	0	copy fasta	SPC24	chr19	11140493	11160782
SPC24_chr19_11140493_11160782	0/0	t0071	1708	1	0	0	0	0	1	copy fasta	SPC24	chr19	11140493	11160782
SPC24_chr19_11140493_11160782	0/0	t0072	1697	1	1	0	0	0	0	copy fasta	SPC24	chr19	11140493	11160782
SPC24_chr19_11140493_11160782	0/0	t0073	1697	1	0	1	0	0	0	copy fasta	SPC24	chr19	11140493	11160782