JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	SAS	tseq	genename	chr	start	end
SPC24_chr19_11140493_11160782	0/0	t0074	1720	1	1	0	0	0	copy fasta	SPC24	chr19	11140493	11160782
SPC24_chr19_11140493_11160782	0/0	t0075	1721	1	1	0	0	0	copy fasta	SPC24	chr19	11140493	11160782
SPC24_chr19_11140493_11160782	0/0	t0076	1722	1	1	0	0	0	copy fasta	SPC24	chr19	11140493	11160782
SPC24_chr19_11140493_11160782	0/0	t0077	1724	1	0	0	1	0	copy fasta	SPC24	chr19	11140493	11160782
SPC24_chr19_11140493_11160782	0/0	t0078	1698	1	1	0	0	0	copy fasta	SPC24	chr19	11140493	11160782
SPC24_chr19_11140493_11160782	0/0	t0079	1707	1	0	0	1	0	copy fasta	SPC24	chr19	11140493	11160782
SPC24_chr19_11140493_11160782	0/0	t0080	1698	1	1	0	0	0	copy fasta	SPC24	chr19	11140493	11160782
SPC24_chr19_11140493_11160782	0/0	t0081	1711	1	0	0	1	0	copy fasta	SPC24	chr19	11140493	11160782
SPC24_chr19_11140493_11160782	0/0	t0082	1711	1	0	0	1	0	copy fasta	SPC24	chr19	11140493	11160782
SPC24_chr19_11140493_11160782	0/0	t0083	1708	1	0	0	0	1	copy fasta	SPC24	chr19	11140493	11160782
SPC24_chr19_11140493_11160782	0/0	t0084	1709	1	0	0	0	1	copy fasta	SPC24	chr19	11140493	11160782
SPC24_chr19_11140493_11160782	0/0	t0085	1710	1	0	0	0	1	copy fasta	SPC24	chr19	11140493	11160782
SPC24_chr19_11140493_11160782	0/0	t0086	1722	1	0	0	1	0	copy fasta	SPC24	chr19	11140493	11160782
SPC24_chr19_11140493_11160782	0/0	t0087	1723	1	0	1	0	0	copy fasta	SPC24	chr19	11140493	11160782
SPC24_chr19_11140493_11160782	0/0	t0088	1723	1	0	0	1	0	copy fasta	SPC24	chr19	11140493	11160782
SPC24_chr19_11140493_11160782	0/0	t0089	1708	1	0	0	1	0	copy fasta	SPC24	chr19	11140493	11160782
SPC24_chr19_11140493_11160782	0/0	t0090	1722	1	0	0	1	0	copy fasta	SPC24	chr19	11140493	11160782
SPC24_chr19_11140493_11160782	0/0	t0091	1724	1	0	0	1	0	copy fasta	SPC24	chr19	11140493	11160782
SPC24_chr19_11140493_11160782	0/0	t0092	1708	1	0	1	0	0	copy fasta	SPC24	chr19	11140493	11160782
SPC24_chr19_11140493_11160782	0/0	t0093	1710	1	0	1	0	0	copy fasta	SPC24	chr19	11140493	11160782
SPC24_chr19_11140493_11160782	0/0	t0094	1723	1	0	0	1	0	copy fasta	SPC24	chr19	11140493	11160782
SPC24_chr19_11140493_11160782	0/0	t0095	1710	1	0	0	1	0	copy fasta	SPC24	chr19	11140493	11160782
SPC24_chr19_11140493_11160782	0/0	t0096	1710	1	0	0	0	1	copy fasta	SPC24	chr19	11140493	11160782
SPC24_chr19_11140493_11160782	0/0	t0097	1710	1	0	1	0	0	copy fasta	SPC24	chr19	11140493	11160782
SPC24_chr19_11140493_11160782	0/0	t0098	1709	1	0	1	0	0	copy fasta	SPC24	chr19	11140493	11160782
SPC24_chr19_11140493_11160782	0/0	t0099	1727	1	0	0	0	1	copy fasta	SPC24	chr19	11140493	11160782
SPC24_chr19_11140493_11160782	0/0	t0100	1710	1	0	0	0	1	copy fasta	SPC24	chr19	11140493	11160782
SPC24_chr19_11140493_11160782	0/0	t0101	1728	1	0	0	0	1	copy fasta	SPC24	chr19	11140493	11160782
SPC24_chr19_11140493_11160782	0/0	t0102	1728	1	0	1	0	0	copy fasta	SPC24	chr19	11140493	11160782
SPC24_chr19_11140493_11160782	0/0	t0103	1722	1	0	0	0	1	copy fasta	SPC24	chr19	11140493	11160782
SPC24_chr19_11140493_11160782	0/0	t0104	1733	1	0	1	0	0	copy fasta	SPC24	chr19	11140493	11160782
SPC24_chr19_11140493_11160782	0/0	t0105	1698	1	1	0	0	0	copy fasta	SPC24	chr19	11140493	11160782
SPC24_chr19_11140493_11160782	0/0	t0106	1709	1	0	1	0	0	copy fasta	SPC24	chr19	11140493	11160782
SPC24_chr19_11140493_11160782	0/0	t0107	1721	1	0	1	0	0	copy fasta	SPC24	chr19	11140493	11160782
SPC24_chr19_11140493_11160782	0/0	t0108	1722	1	0	1	0	0	copy fasta	SPC24	chr19	11140493	11160782
SPC24_chr19_11140493_11160782	0/0	t0109	1728	1	1	0	0	0	copy fasta	SPC24	chr19	11140493	11160782
SPC24_chr19_11140493_11160782	0/0	t0110	1709	1	0	0	1	0	copy fasta	SPC24	chr19	11140493	11160782
SPC24_chr19_11140493_11160782	0/0	t0111	1721	1	0	0	1	0	copy fasta	SPC24	chr19	11140493	11160782
SPC24_chr19_11140493_11160782	0/0	t0112	1722	1	0	0	1	0	copy fasta	SPC24	chr19	11140493	11160782
SPC24_chr19_11140493_11160782	0/0	t0113	1721	1	0	0	1	0	copy fasta	SPC24	chr19	11140493	11160782
SPC24_chr19_11140493_11160782	0/0	t0114	1721	1	0	0	1	0	copy fasta	SPC24	chr19	11140493	11160782
SPC24_chr19_11140493_11160782	0/0	t0115	1723	1	0	0	1	0	copy fasta	SPC24	chr19	11140493	11160782
SPC24_chr19_11140493_11160782	0/0	t0116	1724	1	0	0	1	0	copy fasta	SPC24	chr19	11140493	11160782
SPC24_chr19_11140493_11160782	0/0	t0117	1725	1	0	0	1	0	copy fasta	SPC24	chr19	11140493	11160782
SPC24_chr19_11140493_11160782	0/0	t0118	1728	1	0	0	1	0	copy fasta	SPC24	chr19	11140493	11160782
SPC24_chr19_11140493_11160782	0/0	t0119	1721	1	0	0	1	0	copy fasta	SPC24	chr19	11140493	11160782
SPC24_chr19_11140493_11160782	0/0	t0120	1720	1	0	0	1	0	copy fasta	SPC24	chr19	11140493	11160782
SPC24_chr19_11140493_11160782	0/0	t0121	1723	1	0	0	1	0	copy fasta	SPC24	chr19	11140493	11160782
SPC24_chr19_11140493_11160782	0/0	t0122	1699	1	1	0	0	0	copy fasta	SPC24	chr19	11140493	11160782
SPC24_chr19_11140493_11160782	0/0	t0123	1721	1	0	0	1	0	copy fasta	SPC24	chr19	11140493	11160782