JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SPC24_chr19_11140493_11160782	0/0	t0174	1725	1	0	0	1	0	0	copy fasta	SPC24	chr19	11140493	11160782
SPC24_chr19_11140493_11160782	0/0	t0175	1726	1	0	0	1	0	0	copy fasta	SPC24	chr19	11140493	11160782
SPC24_chr19_11140493_11160782	0/0	t0176	1728	1	0	0	1	0	0	copy fasta	SPC24	chr19	11140493	11160782
SPC24_chr19_11140493_11160782	0/0	t0177	1731	1	0	0	1	0	0	copy fasta	SPC24	chr19	11140493	11160782
SPC24_chr19_11140493_11160782	0/0	t0178	1731	1	0	0	1	0	0	copy fasta	SPC24	chr19	11140493	11160782
SPC24_chr19_11140493_11160782	0/0	t0179	1724	1	0	0	1	0	0	copy fasta	SPC24	chr19	11140493	11160782
SPC24_chr19_11140493_11160782	0/0	t0180	1712	1	0	1	0	0	0	copy fasta	SPC24	chr19	11140493	11160782
SPC24_chr19_11140493_11160782	0/0	t0181	1721	1	0	0	1	0	0	copy fasta	SPC24	chr19	11140493	11160782
SPC24_chr19_11140493_11160782	0/0	t0182	1717	1	1	0	0	0	0	copy fasta	SPC24	chr19	11140493	11160782
SPC24_chr19_11140493_11160782	0/0	t0183	1698	1	1	0	0	0	0	copy fasta	SPC24	chr19	11140493	11160782
SPC24_chr19_11140493_11160782	0/0	t0184	1698	1	1	0	0	0	0	copy fasta	SPC24	chr19	11140493	11160782
SPC24_chr19_11140493_11160782	0/0	t0185	1717	1	1	0	0	0	0	copy fasta	SPC24	chr19	11140493	11160782
SPC24_chr19_11140493_11160782	0/0	t0186	1719	1	1	0	0	0	0	copy fasta	SPC24	chr19	11140493	11160782
SPC24_chr19_11140493_11160782	0/0	t0187	1721	1	0	0	1	0	0	copy fasta	SPC24	chr19	11140493	11160782
SPC24_chr19_11140493_11160782	0/0	t0188	1722	1	0	0	1	0	0	copy fasta	SPC24	chr19	11140493	11160782
SPC24_chr19_11140493_11160782	0/0	t0189	1726	1	0	0	0	0	1	copy fasta	SPC24	chr19	11140493	11160782
SPC24_chr19_11140493_11160782	0/0	t0190	1727	1	0	0	1	0	0	copy fasta	SPC24	chr19	11140493	11160782
SPC24_chr19_11140493_11160782	0/0	t0191	1715	1	1	0	0	0	0	copy fasta	SPC24	chr19	11140493	11160782
SPC24_chr19_11140493_11160782	0/0	t0192	1727	1	1	0	0	0	0	copy fasta	SPC24	chr19	11140493	11160782
SPC24_chr19_11140493_11160782	0/0	t0193	1705	1	1	0	0	0	0	copy fasta	SPC24	chr19	11140493	11160782
SPC24_chr19_11140493_11160782	0/0	t0194	1710	1	1	0	0	0	0	copy fasta	SPC24	chr19	11140493	11160782
SPC24_chr19_11140493_11160782	0/0	t0195	1698	1	1	0	0	0	0	copy fasta	SPC24	chr19	11140493	11160782
SPC24_chr19_11140493_11160782	0/0	t0196	1722	1	1	0	0	0	0	copy fasta	SPC24	chr19	11140493	11160782
SPC24_chr19_11140493_11160782	0/0	t0197	1723	1	1	0	0	0	0	copy fasta	SPC24	chr19	11140493	11160782
SPC24_chr19_11140493_11160782	0/0	t0198	1711	1	1	0	0	0	0	copy fasta	SPC24	chr19	11140493	11160782
SPC24_chr19_11140493_11160782	0/0	t0199	1712	1	1	0	0	0	0	copy fasta	SPC24	chr19	11140493	11160782
SPC24_chr19_11140493_11160782	0/0	t0200	1722	1	0	0	1	0	0	copy fasta	SPC24	chr19	11140493	11160782
SPC24_chr19_11140493_11160782	0/0	t0201	1698	1	0	0	0	1	0	copy fasta	SPC24	chr19	11140493	11160782
SPC25_chr2_168865891_168895430	0/0	t0001	669	152	42	24	64	6	16	copy fasta	SPC25	chr2	168865891	168895430
SPC25_chr2_168865891_168895430	0/0	t0002	669	116	13	24	60	5	14	copy fasta	SPC25	chr2	168865891	168895430
SPC25_chr2_168865891_168895430	0/0	t0003	669	35	31	2	0	2	0	copy fasta	SPC25	chr2	168865891	168895430
SPC25_chr2_168865891_168895430	0/0	t0004	668	32	0	13	15	3	1	copy fasta	SPC25	chr2	168865891	168895430
SPC25_chr2_168865891_168895430	0/0	t0005	669	12	0	0	11	0	1	copy fasta	SPC25	chr2	168865891	168895430
SPC25_chr2_168865891_168895430	0/0	t0006	669	3	3	0	0	0	0	copy fasta	SPC25	chr2	168865891	168895430
SPC25_chr2_168865891_168895430	0/0	t0007	669	2	2	0	0	0	0	copy fasta	SPC25	chr2	168865891	168895430
SPC25_chr2_168865891_168895430	0/0	t0008	669	2	1	1	0	0	0	copy fasta	SPC25	chr2	168865891	168895430
SPC25_chr2_168865891_168895430	0/0	t0009	669	2	2	0	0	0	0	copy fasta	SPC25	chr2	168865891	168895430
SPC25_chr2_168865891_168895430	0/0	t0010	669	1	1	0	0	0	0	copy fasta	SPC25	chr2	168865891	168895430
SPC25_chr2_168865891_168895430	0/0	t0011	668	1	0	0	1	0	0	copy fasta	SPC25	chr2	168865891	168895430
SPC25_chr2_168865891_168895430	0/0	t0012	669	1	1	0	0	0	0	copy fasta	SPC25	chr2	168865891	168895430
SPC25_chr2_168865891_168895430	0/0	t0013	669	1	0	0	1	0	0	copy fasta	SPC25	chr2	168865891	168895430
SPCS1_chr3_52701106_52716148	0/1	t0001	3477	149	13	28	74	5	28	copy fasta	SPCS1	chr3	52701106	52716148
SPCS1_chr3_52701106_52716148	0/0	t0002	3482	93	1	18	68	2	4	copy fasta	SPCS1	chr3	52701106	52716148
SPCS1_chr3_52701106_52716148	0/0	t0003	3477	17	11	3	0	2	1	copy fasta	SPCS1	chr3	52701106	52716148
SPCS1_chr3_52701106_52716148	0/0	t0004	3477	16	2	9	4	1	0	copy fasta	SPCS1	chr3	52701106	52716148
SPCS1_chr3_52701106_52716148	0/0	t0005	3483	16	1	2	9	2	2	copy fasta	SPCS1	chr3	52701106	52716148
SPCS1_chr3_52701106_52716148	0/0	t0006	3476	13	13	0	0	0	0	copy fasta	SPCS1	chr3	52701106	52716148
SPCS1_chr3_52701106_52716148	0/0	t0007	3477	12	12	0	0	0	0	copy fasta	SPCS1	chr3	52701106	52716148
SPCS1_chr3_52701106_52716148	0/0	t0008	3478	9	0	0	6	1	2	copy fasta	SPCS1	chr3	52701106	52716148
SPCS1_chr3_52701106_52716148	0/0	t0009	3480	9	9	0	0	0	0	copy fasta	SPCS1	chr3	52701106	52716148