JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SPCS1_chr3_52701106_52716148	0/0	t0010	3481	8	1	3	4	0	0	copy fasta	SPCS1	chr3	52701106	52716148
SPCS1_chr3_52701106_52716148	0/0	t0011	3482	6	6	0	0	0	0	copy fasta	SPCS1	chr3	52701106	52716148
SPCS1_chr3_52701106_52716148	1/0	t0012	3478	5	4	0	0	0	0	copy fasta	SPCS1	chr3	52701106	52716148
SPCS1_chr3_52701106_52716148	0/0	t0013	3481	5	0	0	5	0	0	copy fasta	SPCS1	chr3	52701106	52716148
SPCS1_chr3_52701106_52716148	0/0	t0014	3469	5	0	3	0	0	2	copy fasta	SPCS1	chr3	52701106	52716148
SPCS1_chr3_52701106_52716148	0/0	t0015	3479	5	4	1	0	0	0	copy fasta	SPCS1	chr3	52701106	52716148
SPCS1_chr3_52701106_52716148	0/0	t0016	3478	4	0	1	3	0	0	copy fasta	SPCS1	chr3	52701106	52716148
SPCS1_chr3_52701106_52716148	0/0	t0017	3476	4	1	0	2	1	0	copy fasta	SPCS1	chr3	52701106	52716148
SPCS1_chr3_52701106_52716148	0/0	t0018	3480	4	4	0	0	0	0	copy fasta	SPCS1	chr3	52701106	52716148
SPCS1_chr3_52701106_52716148	0/0	t0019	3478	2	0	2	0	0	0	copy fasta	SPCS1	chr3	52701106	52716148
SPCS1_chr3_52701106_52716148	0/0	t0020	3476	2	0	0	1	1	0	copy fasta	SPCS1	chr3	52701106	52716148
SPCS1_chr3_52701106_52716148	0/0	t0021	3481	2	2	0	0	0	0	copy fasta	SPCS1	chr3	52701106	52716148
SPCS1_chr3_52701106_52716148	0/0	t0022	3477	1	0	1	0	0	0	copy fasta	SPCS1	chr3	52701106	52716148
SPCS1_chr3_52701106_52716148	0/0	t0023	3480	1	0	0	0	0	1	copy fasta	SPCS1	chr3	52701106	52716148
SPCS1_chr3_52701106_52716148	0/0	t0024	3477	1	1	0	0	0	0	copy fasta	SPCS1	chr3	52701106	52716148
SPCS1_chr3_52701106_52716148	0/0	t0025	3478	1	0	1	0	0	0	copy fasta	SPCS1	chr3	52701106	52716148
SPCS1_chr3_52701106_52716148	0/0	t0026	3476	1	0	0	1	0	0	copy fasta	SPCS1	chr3	52701106	52716148
SPCS1_chr3_52701106_52716148	0/0	t0027	3477	1	1	0	0	0	0	copy fasta	SPCS1	chr3	52701106	52716148
SPCS1_chr3_52701106_52716148	0/0	t0028	2963	1	0	0	1	0	0	copy fasta	SPCS1	chr3	52701106	52716148
SPCS1_chr3_52701106_52716148	0/0	t0029	3476	1	1	0	0	0	0	copy fasta	SPCS1	chr3	52701106	52716148
SPCS1_chr3_52701106_52716148	0/0	t0030	3477	1	0	0	0	0	1	copy fasta	SPCS1	chr3	52701106	52716148
SPCS1_chr3_52701106_52716148	0/0	t0031	3480	1	0	0	0	0	1	copy fasta	SPCS1	chr3	52701106	52716148
SPCS1_chr3_52701106_52716148	0/0	t0032	3484	1	0	0	1	0	0	copy fasta	SPCS1	chr3	52701106	52716148
SPCS1_chr3_52701106_52716148	0/0	t0033	3473	1	0	0	1	0	0	copy fasta	SPCS1	chr3	52701106	52716148
SPCS1_chr3_52701106_52716148	0/0	t0034	3482	1	0	0	1	0	0	copy fasta	SPCS1	chr3	52701106	52716148
SPCS1_chr3_52701106_52716148	0/0	t0035	3483	1	0	1	0	0	0	copy fasta	SPCS1	chr3	52701106	52716148
SPCS1_chr3_52701106_52716148	0/0	t0036	3478	1	1	0	0	0	0	copy fasta	SPCS1	chr3	52701106	52716148
SPCS1_chr3_52701106_52716148	0/0	t0037	3478	1	0	0	1	0	0	copy fasta	SPCS1	chr3	52701106	52716148
SPCS1_chr3_52701106_52716148	0/0	t0038	3482	1	0	1	0	0	0	copy fasta	SPCS1	chr3	52701106	52716148
SPCS1_chr3_52701106_52716148	0/0	t0039	3481	1	0	1	0	0	0	copy fasta	SPCS1	chr3	52701106	52716148
SPCS1_chr3_52701106_52716148	0/0	t0040	3479	1	1	0	0	0	0	copy fasta	SPCS1	chr3	52701106	52716148
SPCS1_chr3_52701106_52716148	0/0	t0041	3468	1	0	0	0	1	0	copy fasta	SPCS1	chr3	52701106	52716148
SPCS1_chr3_52701106_52716148	0/0	t0042	3478	1	1	0	0	0	0	copy fasta	SPCS1	chr3	52701106	52716148
SPCS1_chr3_52701106_52716148	0/0	t0043	3479	1	0	1	0	0	0	copy fasta	SPCS1	chr3	52701106	52716148
SPCS1_chr3_52701106_52716148	0/0	t0044	3478	1	1	0	0	0	0	copy fasta	SPCS1	chr3	52701106	52716148
SPCS1_chr3_52701106_52716148	0/0	t0045	3478	1	1	0	0	0	0	copy fasta	SPCS1	chr3	52701106	52716148
SPCS2_chr11_74944266_74984033	1/0	t0001	2011	219	61	28	101	10	18	copy fasta	SPCS2	chr11	74944266	74984033
SPCS2_chr11_74944266_74984033	0/0	t0002	2011	105	24	20	40	6	15	copy fasta	SPCS2	chr11	74944266	74984033
SPCS2_chr11_74944266_74984033	0/0	t0003	2011	11	0	6	0	1	4	copy fasta	SPCS2	chr11	74944266	74984033
SPCS2_chr11_74944266_74984033	0/0	t0004	2008	10	0	1	9	0	0	copy fasta	SPCS2	chr11	74944266	74984033
SPCS2_chr11_74944266_74984033	0/1	t0005	2011	9	0	4	0	1	3	copy fasta	SPCS2	chr11	74944266	74984033
SPCS2_chr11_74944266_74984033	0/0	t0006	2011	9	9	0	0	0	0	copy fasta	SPCS2	chr11	74944266	74984033
SPCS2_chr11_74944266_74984033	0/0	t0007	2012	4	0	0	4	0	0	copy fasta	SPCS2	chr11	74944266	74984033
SPCS2_chr11_74944266_74984033	0/0	t0008	2011	3	3	0	0	0	0	copy fasta	SPCS2	chr11	74944266	74984033
SPCS2_chr11_74944266_74984033	0/0	t0009	2011	2	0	0	2	0	0	copy fasta	SPCS2	chr11	74944266	74984033
SPCS2_chr11_74944266_74984033	0/0	t0010	2011	2	0	0	0	0	2	copy fasta	SPCS2	chr11	74944266	74984033
SPCS2_chr11_74944266_74984033	0/0	t0011	2011	1	0	1	0	0	0	copy fasta	SPCS2	chr11	74944266	74984033
SPCS2_chr11_74944266_74984033	0/0	t0012	2011	1	0	0	1	0	0	copy fasta	SPCS2	chr11	74944266	74984033
SPCS2_chr11_74944266_74984033	0/0	t0013	2011	1	0	0	1	0	0	copy fasta	SPCS2	chr11	74944266	74984033
SPCS2_chr11_74944266_74984033	0/0	t0014	2011	1	1	0	0	0	0	copy fasta	SPCS2	chr11	74944266	74984033