JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SPCS3_chr4_176314966_176337245	0/0	t0001	4027	135	51	23	42	5	14	copy fasta	SPCS3	chr4	176314966	176337245
SPCS3_chr4_176314966_176337245	0/0	t0002	4027	74	1	20	45	2	6	copy fasta	SPCS3	chr4	176314966	176337245
SPCS3_chr4_176314966_176337245	0/0	t0003	4019	69	5	9	48	0	7	copy fasta	SPCS3	chr4	176314966	176337245
SPCS3_chr4_176314966_176337245	0/0	t0004	4027	54	0	2	49	0	3	copy fasta	SPCS3	chr4	176314966	176337245
SPCS3_chr4_176314966_176337245	0/0	t0005	4024	17	3	8	0	2	4	copy fasta	SPCS3	chr4	176314966	176337245
SPCS3_chr4_176314966_176337245	0/0	t0006	4026	10	0	4	0	3	3	copy fasta	SPCS3	chr4	176314966	176337245
SPCS3_chr4_176314966_176337245	0/0	t0007	4027	10	3	2	0	3	2	copy fasta	SPCS3	chr4	176314966	176337245
SPCS3_chr4_176314966_176337245	0/0	t0008	4028	8	0	0	3	0	5	copy fasta	SPCS3	chr4	176314966	176337245
SPCS3_chr4_176314966_176337245	0/0	t0009	4027	7	0	7	0	0	0	copy fasta	SPCS3	chr4	176314966	176337245
SPCS3_chr4_176314966_176337245	0/0	t0010	4027	7	0	0	7	0	0	copy fasta	SPCS3	chr4	176314966	176337245
SPCS3_chr4_176314966_176337245	0/0	t0011	4026	6	6	0	0	0	0	copy fasta	SPCS3	chr4	176314966	176337245
SPCS3_chr4_176314966_176337245	1/0	t0012	4027	5	3	1	0	0	0	copy fasta	SPCS3	chr4	176314966	176337245
SPCS3_chr4_176314966_176337245	0/0	t0013	4019	5	0	0	5	0	0	copy fasta	SPCS3	chr4	176314966	176337245
SPCS3_chr4_176314966_176337245	0/0	t0014	4026	4	3	1	0	0	0	copy fasta	SPCS3	chr4	176314966	176337245
SPCS3_chr4_176314966_176337245	0/0	t0015	4027	4	0	1	0	3	0	copy fasta	SPCS3	chr4	176314966	176337245
SPCS3_chr4_176314966_176337245	0/0	t0016	4027	4	4	0	0	0	0	copy fasta	SPCS3	chr4	176314966	176337245
SPCS3_chr4_176314966_176337245	0/0	t0017	4026	4	4	0	0	0	0	copy fasta	SPCS3	chr4	176314966	176337245
SPCS3_chr4_176314966_176337245	0/0	t0018	4026	4	0	0	4	0	0	copy fasta	SPCS3	chr4	176314966	176337245
SPCS3_chr4_176314966_176337245	0/0	t0019	4028	3	3	0	0	0	0	copy fasta	SPCS3	chr4	176314966	176337245
SPCS3_chr4_176314966_176337245	0/0	t0020	4027	3	0	0	2	0	1	copy fasta	SPCS3	chr4	176314966	176337245
SPCS3_chr4_176314966_176337245	0/0	t0021	4028	3	2	1	0	0	0	copy fasta	SPCS3	chr4	176314966	176337245
SPCS3_chr4_176314966_176337245	0/0	t0022	4028	3	0	0	2	0	1	copy fasta	SPCS3	chr4	176314966	176337245
SPCS3_chr4_176314966_176337245	0/0	t0023	4026	2	2	0	0	0	0	copy fasta	SPCS3	chr4	176314966	176337245
SPCS3_chr4_176314966_176337245	0/0	t0024	4028	2	0	0	2	0	0	copy fasta	SPCS3	chr4	176314966	176337245
SPCS3_chr4_176314966_176337245	0/0	t0025	4028	2	2	0	0	0	0	copy fasta	SPCS3	chr4	176314966	176337245
SPCS3_chr4_176314966_176337245	0/0	t0026	4019	2	0	0	2	0	0	copy fasta	SPCS3	chr4	176314966	176337245
SPCS3_chr4_176314966_176337245	0/0	t0027	4019	2	0	0	2	0	0	copy fasta	SPCS3	chr4	176314966	176337245
SPCS3_chr4_176314966_176337245	0/0	t0028	4019	2	0	0	2	0	0	copy fasta	SPCS3	chr4	176314966	176337245
SPCS3_chr4_176314966_176337245	0/0	t0029	4027	1	0	0	1	0	0	copy fasta	SPCS3	chr4	176314966	176337245
SPCS3_chr4_176314966_176337245	0/0	t0030	4026	1	0	1	0	0	0	copy fasta	SPCS3	chr4	176314966	176337245
SPCS3_chr4_176314966_176337245	0/0	t0031	4027	1	1	0	0	0	0	copy fasta	SPCS3	chr4	176314966	176337245
SPCS3_chr4_176314966_176337245	0/0	t0032	4012	1	0	0	1	0	0	copy fasta	SPCS3	chr4	176314966	176337245
SPCS3_chr4_176314966_176337245	0/0	t0033	4026	1	1	0	0	0	0	copy fasta	SPCS3	chr4	176314966	176337245
SPCS3_chr4_176314966_176337245	0/0	t0034	4027	1	1	0	0	0	0	copy fasta	SPCS3	chr4	176314966	176337245
SPCS3_chr4_176314966_176337245	0/0	t0035	4028	1	1	0	0	0	0	copy fasta	SPCS3	chr4	176314966	176337245
SPCS3_chr4_176314966_176337245	0/1	t0036	4027	1	0	0	0	0	0	copy fasta	SPCS3	chr4	176314966	176337245
SPCS3_chr4_176314966_176337245	0/0	t0037	4027	1	1	0	0	0	0	copy fasta	SPCS3	chr4	176314966	176337245
SPCS3_chr4_176314966_176337245	0/0	t0038	4029	1	1	0	0	0	0	copy fasta	SPCS3	chr4	176314966	176337245
SPCS3_chr4_176314966_176337245	0/0	t0039	4026	1	0	0	0	0	1	copy fasta	SPCS3	chr4	176314966	176337245
SPCS3_chr4_176314966_176337245	0/0	t0040	4026	1	1	0	0	0	0	copy fasta	SPCS3	chr4	176314966	176337245
SPCS3_chr4_176314966_176337245	0/0	t0041	4026	1	1	0	0	0	0	copy fasta	SPCS3	chr4	176314966	176337245
SPCS3_chr4_176314966_176337245	0/0	t0042	4019	1	0	0	0	0	1	copy fasta	SPCS3	chr4	176314966	176337245
SPCS3_chr4_176314966_176337245	0/0	t0043	4019	1	0	0	1	0	0	copy fasta	SPCS3	chr4	176314966	176337245
SPCS3_chr4_176314966_176337245	0/0	t0044	4027	1	0	0	1	0	0	copy fasta	SPCS3	chr4	176314966	176337245
SPCS3_chr4_176314966_176337245	0/0	t0045	4027	1	0	0	1	0	0	copy fasta	SPCS3	chr4	176314966	176337245
SPCS3_chr4_176314966_176337245	0/0	t0046	4027	1	0	0	1	0	0	copy fasta	SPCS3	chr4	176314966	176337245
SPCS3_chr4_176314966_176337245	0/0	t0047	4027	1	0	0	1	0	0	copy fasta	SPCS3	chr4	176314966	176337245
SPDEF_chr6_34532802_34561329	1/1	t0001	903	246	43	53	101	12	35	copy fasta	SPDEF	chr6	34532802	34561329
SPDEF_chr6_34532802_34561329	0/0	t0002	903	73	29	8	35	1	0	copy fasta	SPDEF	chr6	34532802	34561329
SPDEF_chr6_34532802_34561329	0/0	t0003	903	27	16	4	3	1	3	copy fasta	SPDEF	chr6	34532802	34561329