JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SPDEF_chr6_34532802_34561329	0/0	t0004	903	14	0	0	14	0	0	copy fasta	SPDEF	chr6	34532802	34561329
SPDEF_chr6_34532802_34561329	0/0	t0005	904	10	1	4	4	0	1	copy fasta	SPDEF	chr6	34532802	34561329
SPDEF_chr6_34532802_34561329	0/0	t0006	903	2	2	0	0	0	0	copy fasta	SPDEF	chr6	34532802	34561329
SPDEF_chr6_34532802_34561329	0/0	t0007	904	2	1	0	1	0	0	copy fasta	SPDEF	chr6	34532802	34561329
SPDEF_chr6_34532802_34561329	0/0	t0008	904	1	1	0	0	0	0	copy fasta	SPDEF	chr6	34532802	34561329
SPDEF_chr6_34532802_34561329	0/0	t0009	903	1	0	1	0	0	0	copy fasta	SPDEF	chr6	34532802	34561329
SPDEF_chr6_34532802_34561329	0/0	t0010	903	1	0	0	1	0	0	copy fasta	SPDEF	chr6	34532802	34561329
SPDEF_chr6_34532802_34561329	0/0	t0011	903	1	0	0	1	0	0	copy fasta	SPDEF	chr6	34532802	34561329
SPDEF_chr6_34532802_34561329	0/0	t0012	903	1	1	0	0	0	0	copy fasta	SPDEF	chr6	34532802	34561329
SPDEF_chr6_34532802_34561329	0/0	t0013	903	1	0	0	1	0	0	copy fasta	SPDEF	chr6	34532802	34561329
SPDEF_chr6_34532802_34561329	0/0	t0014	903	1	0	0	0	0	1	copy fasta	SPDEF	chr6	34532802	34561329
SPDEF_chr6_34532802_34561329	0/0	t0015	903	1	0	0	1	0	0	copy fasta	SPDEF	chr6	34532802	34561329
SPDL1_chr5_169578773_169609778	0/1	t0001	712	234	61	38	102	8	24	copy fasta	SPDL1	chr5	169578773	169609778
SPDL1_chr5_169578773_169609778	1/0	t0002	712	136	22	30	66	5	12	copy fasta	SPDL1	chr5	169578773	169609778
SPDL1_chr5_169578773_169609778	0/0	t0003	712	15	7	5	0	1	2	copy fasta	SPDL1	chr5	169578773	169609778
SPDL1_chr5_169578773_169609778	0/0	t0004	709	6	0	0	6	0	0	copy fasta	SPDL1	chr5	169578773	169609778
SPDL1_chr5_169578773_169609778	0/0	t0005	712	2	0	0	2	0	0	copy fasta	SPDL1	chr5	169578773	169609778
SPDL1_chr5_169578773_169609778	0/0	t0006	712	1	0	0	1	0	0	copy fasta	SPDL1	chr5	169578773	169609778
SPDL1_chr5_169578773_169609778	0/0	t0007	712	1	1	0	0	0	0	copy fasta	SPDL1	chr5	169578773	169609778
SPDL1_chr5_169578773_169609778	0/0	t0008	712	1	1	0	0	0	0	copy fasta	SPDL1	chr5	169578773	169609778
SPDL1_chr5_169578773_169609778	0/0	t0009	712	1	0	0	1	0	0	copy fasta	SPDL1	chr5	169578773	169609778
SPDL1_chr5_169578773_169609778	0/0	t0010	712	1	0	1	0	0	0	copy fasta	SPDL1	chr5	169578773	169609778
SPDYA_chr2_28805834_28855610	1/1	t0001	876	319	62	62	138	18	37	copy fasta	SPDYA	chr2	28805834	28855610
SPDYA_chr2_28805834_28855610	0/0	t0002	876	9	9	0	0	0	0	copy fasta	SPDYA	chr2	28805834	28855610
SPDYA_chr2_28805834_28855610	0/0	t0003	876	6	4	2	0	0	0	copy fasta	SPDYA	chr2	28805834	28855610
SPDYA_chr2_28805834_28855610	0/0	t0004	872	3	3	0	0	0	0	copy fasta	SPDYA	chr2	28805834	28855610
SPDYA_chr2_28805834_28855610	0/0	t0005	876	1	0	0	0	0	1	copy fasta	SPDYA	chr2	28805834	28855610
SPDYC_chr11_65165233_65178374	1/1	t0001	218	442	94	74	210	18	44	copy fasta	SPDYC	chr11	65165233	65178374
SPDYE10_chr7_73099008_73160431	0/0	t0001	2276	73	0	21	41	2	9	copy fasta	SPDYE10	chr7	73099008	73160431
SPDYE10_chr7_73099008_73160431	0/0	t0002	2273	46	10	9	22	1	4	copy fasta	SPDYE10	chr7	73099008	73160431
SPDYE10_chr7_73099008_73160431	0/0	t0003	2276	33	3	9	12	3	6	copy fasta	SPDYE10	chr7	73099008	73160431
SPDYE10_chr7_73099008_73160431	0/0	t0004	2276	18	14	2	2	0	0	copy fasta	SPDYE10	chr7	73099008	73160431
SPDYE10_chr7_73099008_73160431	0/0	t0005	2276	10	9	1	0	0	0	copy fasta	SPDYE10	chr7	73099008	73160431
SPDYE10_chr7_73099008_73160431	0/0	t0006	2276	7	1	2	4	0	0	copy fasta	SPDYE10	chr7	73099008	73160431
SPDYE10_chr7_73099008_73160431	0/0	t0007	2276	3	3	0	0	0	0	copy fasta	SPDYE10	chr7	73099008	73160431
SPDYE10_chr7_73099008_73160431	0/0	t0008	2276	3	2	1	0	0	0	copy fasta	SPDYE10	chr7	73099008	73160431
SPDYE10_chr7_73099008_73160431	0/0	t0009	2276	2	2	0	0	0	0	copy fasta	SPDYE10	chr7	73099008	73160431
SPDYE10_chr7_73099008_73160431	0/0	t0010	2273	2	0	0	0	0	2	copy fasta	SPDYE10	chr7	73099008	73160431
SPDYE10_chr7_73099008_73160431	0/0	t0011	2273	2	2	0	0	0	0	copy fasta	SPDYE10	chr7	73099008	73160431
SPDYE10_chr7_73099008_73160431	0/0	t0012	2276	2	2	0	0	0	0	copy fasta	SPDYE10	chr7	73099008	73160431
SPDYE10_chr7_73099008_73160431	0/0	t0013	2276	2	1	0	1	0	0	copy fasta	SPDYE10	chr7	73099008	73160431
SPDYE10_chr7_73099008_73160431	0/0	t0014	2276	2	0	0	0	0	2	copy fasta	SPDYE10	chr7	73099008	73160431
SPDYE10_chr7_73099008_73160431	0/0	t0015	2273	1	1	0	0	0	0	copy fasta	SPDYE10	chr7	73099008	73160431
SPDYE10_chr7_73099008_73160431	0/0	t0016	2276	1	1	0	0	0	0	copy fasta	SPDYE10	chr7	73099008	73160431
SPDYE10_chr7_73099008_73160431	0/0	t0017	2273	1	1	0	0	0	0	copy fasta	SPDYE10	chr7	73099008	73160431
SPDYE10_chr7_73099008_73160431	0/0	t0018	2273	1	0	0	1	0	0	copy fasta	SPDYE10	chr7	73099008	73160431
SPDYE10_chr7_73099008_73160431	0/0	t0019	2273	1	1	0	0	0	0	copy fasta	SPDYE10	chr7	73099008	73160431
SPDYE10_chr7_73099008_73160431	0/0	t0020	2276	1	0	0	1	0	0	copy fasta	SPDYE10	chr7	73099008	73160431
SPDYE10_chr7_73099008_73160431	0/0	t0021	2276	1	1	0	0	0	0	copy fasta	SPDYE10	chr7	73099008	73160431
SPDYE10_chr7_73099008_73160431	0/0	t0022	2276	1	0	1	0	0	0	copy fasta	SPDYE10	chr7	73099008	73160431