Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
BID_chr22_17729138_17779469	0/0	t0004	1592	11	2	3	2	0	4	copy fasta	BID	chr22	17729138	17779469
BID_chr22_17729138_17779469	0/0	t0005	1590	6	0	3	1	0	2	copy fasta	BID	chr22	17729138	17779469
BID_chr22_17729138_17779469	0/0	t0006	1590	4	4	0	0	0	0	copy fasta	BID	chr22	17729138	17779469
BID_chr22_17729138_17779469	0/0	t0007	1590	3	1	2	0	0	0	copy fasta	BID	chr22	17729138	17779469
BID_chr22_17729138_17779469	0/0	t0008	1593	2	2	0	0	0	0	copy fasta	BID	chr22	17729138	17779469
BID_chr22_17729138_17779469	0/0	t0009	1590	2	2	0	0	0	0	copy fasta	BID	chr22	17729138	17779469
BID_chr22_17729138_17779469	0/0	t0010	1590	2	0	1	0	1	0	copy fasta	BID	chr22	17729138	17779469
BID_chr22_17729138_17779469	0/0	t0011	1590	1	0	0	0	1	0	copy fasta	BID	chr22	17729138	17779469
BID_chr22_17729138_17779469	0/0	t0012	1589	1	0	1	0	0	0	copy fasta	BID	chr22	17729138	17779469
BIK_chr22_43105750_43134712	1/1	t0001	469	353	67	76	149	15	44	copy fasta	BIK	chr22	43105750	43134712
BIK_chr22_43105750_43134712	0/0	t0002	470	17	12	4	1	0	0	copy fasta	BIK	chr22	43105750	43134712
BIK_chr22_43105750_43134712	0/0	t0003	469	6	6	0	0	0	0	copy fasta	BIK	chr22	43105750	43134712
BIK_chr22_43105750_43134712	0/0	t0004	469	2	0	0	0	1	1	copy fasta	BIK	chr22	43105750	43134712
BIK_chr22_43105750_43134712	0/0	t0005	470	2	2	0	0	0	0	copy fasta	BIK	chr22	43105750	43134712
BIK_chr22_43105750_43134712	0/0	t0006	469	1	0	1	0	0	0	copy fasta	BIK	chr22	43105750	43134712
BIK_chr22_43105750_43134712	0/0	t0007	469	1	0	0	1	0	0	copy fasta	BIK	chr22	43105750	43134712
BIK_chr22_43105750_43134712	0/0	t0008	469	1	1	0	0	0	0	copy fasta	BIK	chr22	43105750	43134712
BIK_chr22_43105750_43134712	0/0	t0009	469	1	0	1	0	0	0	copy fasta	BIK	chr22	43105750	43134712
BIK_chr22_43105750_43134712	0/0	t0010	469	1	0	0	1	0	0	copy fasta	BIK	chr22	43105750	43134712
BIK_chr22_43105750_43134712	0/0	t0011	469	1	0	0	0	0	1	copy fasta	BIK	chr22	43105750	43134712
BIN1_chr2_127043032_127112154	1/1	t0001	706	297	87	47	116	10	35	copy fasta	BIN1	chr2	127043032	127112154
BIN1_chr2_127043032_127112154	0/0	t0002	706	22	0	8	12	0	2	copy fasta	BIN1	chr2	127043032	127112154
BIN1_chr2_127043032_127112154	0/0	t0003	705	13	5	4	3	0	1	copy fasta	BIN1	chr2	127043032	127112154
BIN1_chr2_127043032_127112154	0/0	t0004	706	4	0	0	4	0	0	copy fasta	BIN1	chr2	127043032	127112154
BIN1_chr2_127043032_127112154	0/0	t0005	705	3	0	3	0	0	0	copy fasta	BIN1	chr2	127043032	127112154
BIN1_chr2_127043032_127112154	0/0	t0006	691	1	0	0	1	0	0	copy fasta	BIN1	chr2	127043032	127112154
BIN1_chr2_127043032_127112154	0/0	t0007	706	1	1	0	0	0	0	copy fasta	BIN1	chr2	127043032	127112154
BIN1_chr2_127043032_127112154	0/0	t0008	706	1	0	0	1	0	0	copy fasta	BIN1	chr2	127043032	127112154
BIN1_chr2_127043032_127112154	0/0	t0009	706	1	0	0	1	0	0	copy fasta	BIN1	chr2	127043032	127112154
BIN1_chr2_127043032_127112154	0/0	t0010	694	1	1	0	0	0	0	copy fasta	BIN1	chr2	127043032	127112154
BIN2_chr12_51276038_51329174	1/1	t0001	534	315	77	55	133	10	38	copy fasta	BIN2	chr12	51276038	51329174
BIN2_chr12_51276038_51329174	0/0	t0002	534	67	14	13	40	0	0	copy fasta	BIN2	chr12	51276038	51329174
BIN2_chr12_51276038_51329174	0/0	t0003	534	11	0	4	0	2	5	copy fasta	BIN2	chr12	51276038	51329174
BIN2_chr12_51276038_51329174	0/0	t0004	534	3	0	0	3	0	0	copy fasta	BIN2	chr12	51276038	51329174
BIN2_chr12_51276038_51329174	0/0	t0005	534	2	1	0	0	0	1	copy fasta	BIN2	chr12	51276038	51329174
BIN2_chr12_51276038_51329174	0/0	t0006	534	2	2	0	0	0	0	copy fasta	BIN2	chr12	51276038	51329174
BIN3_chr8_22615418_22674121	1/0	t0001	1075	188	25	43	100	4	15	copy fasta	BIN3	chr8	22615418	22674121
BIN3_chr8_22615418_22674121	0/1	t0002	1078	75	3	13	33	6	19	copy fasta	BIN3	chr8	22615418	22674121
BIN3_chr8_22615418_22674121	0/0	t0003	1076	26	19	2	5	0	0	copy fasta	BIN3	chr8	22615418	22674121
BIN3_chr8_22615418_22674121	0/0	t0004	1072	13	10	2	1	0	0	copy fasta	BIN3	chr8	22615418	22674121
BIN3_chr8_22615418_22674121	0/0	t0005	1079	12	1	0	6	0	5	copy fasta	BIN3	chr8	22615418	22674121
BIN3_chr8_22615418_22674121	0/0	t0006	1077	10	0	0	10	0	0	copy fasta	BIN3	chr8	22615418	22674121
BIN3_chr8_22615418_22674121	0/0	t0007	1072	8	7	1	0	0	0	copy fasta	BIN3	chr8	22615418	22674121
BIN3_chr8_22615418_22674121	0/0	t0008	1073	7	4	3	0	0	0	copy fasta	BIN3	chr8	22615418	22674121
BIN3_chr8_22615418_22674121	0/0	t0009	1075	5	0	3	0	2	0	copy fasta	BIN3	chr8	22615418	22674121
BIN3_chr8_22615418_22674121	0/0	t0010	1073	4	4	0	0	0	0	copy fasta	BIN3	chr8	22615418	22674121
BIN3_chr8_22615418_22674121	0/0	t0011	1078	4	0	0	4	0	0	copy fasta	BIN3	chr8	22615418	22674121
BIN3_chr8_22615418_22674121	0/0	t0012	1077	4	2	1	1	0	0	copy fasta	BIN3	chr8	22615418	22674121
BIN3_chr8_22615418_22674121	0/0	t0013	1073	2	2	0	0	0	0	copy fasta	BIN3	chr8	22615418	22674121
BIN3_chr8_22615418_22674121	0/0	t0014	1073	2	1	1	0	0	0	copy fasta	BIN3	chr8	22615418	22674121