JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SPDYE16_chr7_76526313_76548297	0/0	t0015	2078	1	0	1	0	0	0	copy fasta	SPDYE16	chr7	76526313	76548297
SPDYE16_chr7_76526313_76548297	0/0	t0016	2078	1	0	1	0	0	0	copy fasta	SPDYE16	chr7	76526313	76548297
SPDYE16_chr7_76526313_76548297	0/0	t0017	2074	1	1	0	0	0	0	copy fasta	SPDYE16	chr7	76526313	76548297
SPDYE16_chr7_76526313_76548297	0/0	t0018	2078	1	0	0	1	0	0	copy fasta	SPDYE16	chr7	76526313	76548297
SPDYE16_chr7_76526313_76548297	0/0	t0019	2078	1	1	0	0	0	0	copy fasta	SPDYE16	chr7	76526313	76548297
SPDYE16_chr7_76526313_76548297	0/0	t0020	2078	1	1	0	0	0	0	copy fasta	SPDYE16	chr7	76526313	76548297
SPDYE16_chr7_76526313_76548297	0/0	t0021	2078	1	1	0	0	0	0	copy fasta	SPDYE16	chr7	76526313	76548297
SPDYE16_chr7_76526313_76548297	0/0	t0022	2078	1	0	0	0	0	1	copy fasta	SPDYE16	chr7	76526313	76548297
SPDYE16_chr7_76526313_76548297	0/0	t0023	2078	1	1	0	0	0	0	copy fasta	SPDYE16	chr7	76526313	76548297
SPDYE16_chr7_76526313_76548297	0/0	t0024	2071	1	0	0	1	0	0	copy fasta	SPDYE16	chr7	76526313	76548297
SPDYE16_chr7_76526313_76548297	0/0	t0025	2071	1	0	1	0	0	0	copy fasta	SPDYE16	chr7	76526313	76548297
SPDYE16_chr7_76526313_76548297	0/0	t0026	2071	1	0	0	1	0	0	copy fasta	SPDYE16	chr7	76526313	76548297
SPDYE17_chr7_77017306_77037361	0/0	t0001	2101	101	42	9	41	0	9	copy fasta	SPDYE17	chr7	77017306	77037361
SPDYE17_chr7_77017306_77037361	0/0	t0002	2103	52	2	17	24	4	5	copy fasta	SPDYE17	chr7	77017306	77037361
SPDYE17_chr7_77017306_77037361	0/0	t0003	2103	47	2	17	11	3	14	copy fasta	SPDYE17	chr7	77017306	77037361
SPDYE17_chr7_77017306_77037361	0/0	t0004	2103	37	2	4	24	2	5	copy fasta	SPDYE17	chr7	77017306	77037361
SPDYE17_chr7_77017306_77037361	0/0	t0005	2101	8	1	6	0	1	0	copy fasta	SPDYE17	chr7	77017306	77037361
SPDYE17_chr7_77017306_77037361	0/0	t0006	2103	6	6	0	0	0	0	copy fasta	SPDYE17	chr7	77017306	77037361
SPDYE17_chr7_77017306_77037361	0/0	t0007	2101	6	0	2	2	1	1	copy fasta	SPDYE17	chr7	77017306	77037361
SPDYE17_chr7_77017306_77037361	0/0	t0008	2103	5	1	0	4	0	0	copy fasta	SPDYE17	chr7	77017306	77037361
SPDYE17_chr7_77017306_77037361	0/0	t0009	2103	4	4	0	0	0	0	copy fasta	SPDYE17	chr7	77017306	77037361
SPDYE17_chr7_77017306_77037361	0/0	t0010	2101	4	0	2	0	1	1	copy fasta	SPDYE17	chr7	77017306	77037361
SPDYE17_chr7_77017306_77037361	0/0	t0011	2099	4	0	1	0	3	0	copy fasta	SPDYE17	chr7	77017306	77037361
SPDYE17_chr7_77017306_77037361	0/0	t0012	2101	3	3	0	0	0	0	copy fasta	SPDYE17	chr7	77017306	77037361
SPDYE17_chr7_77017306_77037361	0/0	t0013	2098	3	3	0	0	0	0	copy fasta	SPDYE17	chr7	77017306	77037361
SPDYE17_chr7_77017306_77037361	0/0	t0014	2103	2	0	0	2	0	0	copy fasta	SPDYE17	chr7	77017306	77037361
SPDYE17_chr7_77017306_77037361	0/0	t0015	2101	2	1	1	0	0	0	copy fasta	SPDYE17	chr7	77017306	77037361
SPDYE17_chr7_77017306_77037361	0/0	t0016	2101	2	2	0	0	0	0	copy fasta	SPDYE17	chr7	77017306	77037361
SPDYE17_chr7_77017306_77037361	0/0	t0017	2103	1	0	0	1	0	0	copy fasta	SPDYE17	chr7	77017306	77037361
SPDYE17_chr7_77017306_77037361	0/0	t0018	2103	1	1	0	0	0	0	copy fasta	SPDYE17	chr7	77017306	77037361
SPDYE17_chr7_77017306_77037361	0/0	t0019	2101	1	0	0	0	0	1	copy fasta	SPDYE17	chr7	77017306	77037361
SPDYE17_chr7_77017306_77037361	0/0	t0020	2101	1	1	0	0	0	0	copy fasta	SPDYE17	chr7	77017306	77037361
SPDYE17_chr7_77017306_77037361	0/0	t0021	2101	1	1	0	0	0	0	copy fasta	SPDYE17	chr7	77017306	77037361
SPDYE17_chr7_77017306_77037361	0/0	t0022	2101	1	0	0	1	0	0	copy fasta	SPDYE17	chr7	77017306	77037361
SPDYE17_chr7_77017306_77037361	0/0	t0023	2100	1	0	1	0	0	0	copy fasta	SPDYE17	chr7	77017306	77037361
SPDYE17_chr7_77017306_77037361	1/0	t0024	2103	1	0	0	0	0	0	copy fasta	SPDYE17	chr7	77017306	77037361
SPDYE17_chr7_77017306_77037361	0/0	t0025	2101	1	0	0	0	1	0	copy fasta	SPDYE17	chr7	77017306	77037361
SPDYE18_chr7_77045391_77067558	0/0	t0001	2017	117	5	27	69	6	10	copy fasta	SPDYE18	chr7	77045391	77067558
SPDYE18_chr7_77045391_77067558	0/0	t0002	2019	76	23	14	29	2	8	copy fasta	SPDYE18	chr7	77045391	77067558
SPDYE18_chr7_77045391_77067558	0/0	t0003	2019	67	24	9	25	0	9	copy fasta	SPDYE18	chr7	77045391	77067558
SPDYE18_chr7_77045391_77067558	0/0	t0004	2019	38	3	12	7	1	15	copy fasta	SPDYE18	chr7	77045391	77067558
SPDYE18_chr7_77045391_77067558	0/1	t0005	2019	28	0	2	24	0	1	copy fasta	SPDYE18	chr7	77045391	77067558
SPDYE18_chr7_77045391_77067558	0/0	t0006	2019	15	0	1	14	0	0	copy fasta	SPDYE18	chr7	77045391	77067558
SPDYE18_chr7_77045391_77067558	0/0	t0007	2019	11	0	4	2	4	1	copy fasta	SPDYE18	chr7	77045391	77067558
SPDYE18_chr7_77045391_77067558	0/0	t0008	2019	5	5	0	0	0	0	copy fasta	SPDYE18	chr7	77045391	77067558
SPDYE18_chr7_77045391_77067558	0/0	t0009	2017	5	4	1	0	0	0	copy fasta	SPDYE18	chr7	77045391	77067558
SPDYE18_chr7_77045391_77067558	0/0	t0010	2019	5	1	0	4	0	0	copy fasta	SPDYE18	chr7	77045391	77067558
SPDYE18_chr7_77045391_77067558	1/0	t0011	2019	4	0	0	0	2	1	copy fasta	SPDYE18	chr7	77045391	77067558
SPDYE18_chr7_77045391_77067558	0/0	t0012	2019	4	4	0	0	0	0	copy fasta	SPDYE18	chr7	77045391	77067558
SPDYE18_chr7_77045391_77067558	0/0	t0013	2017	4	4	0	0	0	0	copy fasta	SPDYE18	chr7	77045391	77067558