JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SPDYE18_chr7_77045391_77067558	0/0	t0014	2019	4	4	0	0	0	0	copy fasta	SPDYE18	chr7	77045391	77067558
SPDYE18_chr7_77045391_77067558	0/0	t0015	2019	4	4	0	0	0	0	copy fasta	SPDYE18	chr7	77045391	77067558
SPDYE18_chr7_77045391_77067558	0/0	t0016	2019	3	3	0	0	0	0	copy fasta	SPDYE18	chr7	77045391	77067558
SPDYE18_chr7_77045391_77067558	0/0	t0017	2019	2	2	0	0	0	0	copy fasta	SPDYE18	chr7	77045391	77067558
SPDYE18_chr7_77045391_77067558	0/0	t0018	2019	2	0	2	0	0	0	copy fasta	SPDYE18	chr7	77045391	77067558
SPDYE18_chr7_77045391_77067558	0/0	t0019	2019	2	2	0	0	0	0	copy fasta	SPDYE18	chr7	77045391	77067558
SPDYE18_chr7_77045391_77067558	0/0	t0020	2019	1	0	0	1	0	0	copy fasta	SPDYE18	chr7	77045391	77067558
SPDYE18_chr7_77045391_77067558	0/0	t0021	2017	1	0	0	1	0	0	copy fasta	SPDYE18	chr7	77045391	77067558
SPDYE18_chr7_77045391_77067558	0/0	t0022	2019	1	1	0	0	0	0	copy fasta	SPDYE18	chr7	77045391	77067558
SPDYE18_chr7_77045391_77067558	0/0	t0023	2019	1	1	0	0	0	0	copy fasta	SPDYE18	chr7	77045391	77067558
SPDYE18_chr7_77045391_77067558	0/0	t0024	2017	1	0	0	1	0	0	copy fasta	SPDYE18	chr7	77045391	77067558
SPDYE18_chr7_77045391_77067558	0/0	t0025	2017	1	0	0	0	0	1	copy fasta	SPDYE18	chr7	77045391	77067558
SPDYE18_chr7_77045391_77067558	0/0	t0026	2017	1	0	0	1	0	0	copy fasta	SPDYE18	chr7	77045391	77067558
SPDYE18_chr7_77045391_77067558	0/0	t0027	2019	1	0	1	0	0	0	copy fasta	SPDYE18	chr7	77045391	77067558
SPDYE18_chr7_77045391_77067558	0/0	t0028	2017	1	0	0	1	0	0	copy fasta	SPDYE18	chr7	77045391	77067558
SPDYE18_chr7_77045391_77067558	0/0	t0029	2019	1	1	0	0	0	0	copy fasta	SPDYE18	chr7	77045391	77067558
SPDYE18_chr7_77045391_77067558	0/0	t0030	2019	1	0	0	1	0	0	copy fasta	SPDYE18	chr7	77045391	77067558
SPDYE18_chr7_77045391_77067558	0/0	t0031	2019	1	0	0	1	0	0	copy fasta	SPDYE18	chr7	77045391	77067558
SPDYE18_chr7_77045391_77067558	0/0	t0032	2019	1	0	0	1	0	0	copy fasta	SPDYE18	chr7	77045391	77067558
SPDYE18_chr7_77045391_77067558	0/0	t0033	2019	1	0	1	0	0	0	copy fasta	SPDYE18	chr7	77045391	77067558
SPDYE18_chr7_77045391_77067558	0/0	t0034	2017	1	0	1	0	0	0	copy fasta	SPDYE18	chr7	77045391	77067558
SPDYE18_chr7_77045391_77067558	0/0	t0035	2019	1	0	0	1	0	0	copy fasta	SPDYE18	chr7	77045391	77067558
SPDYE18_chr7_77045391_77067558	0/0	t0036	2019	1	1	0	0	0	0	copy fasta	SPDYE18	chr7	77045391	77067558
SPDYE18_chr7_77045391_77067558	0/0	t0037	2019	1	0	0	0	1	0	copy fasta	SPDYE18	chr7	77045391	77067558
SPDYE18_chr7_77045391_77067558	0/0	t0038	2017	1	0	0	1	0	0	copy fasta	SPDYE18	chr7	77045391	77067558
SPDYE18_chr7_77045391_77067558	0/0	t0039	2017	1	0	1	0	0	0	copy fasta	SPDYE18	chr7	77045391	77067558
SPDYE1_chr7_43992897_44015124	0/0	t0001	1991	126	23	24	59	2	18	copy fasta	SPDYE1	chr7	43992897	44015124
SPDYE1_chr7_43992897_44015124	1/0	t0002	1989	117	22	14	60	6	14	copy fasta	SPDYE1	chr7	43992897	44015124
SPDYE1_chr7_43992897_44015124	0/1	t0003	1991	34	5	9	16	1	2	copy fasta	SPDYE1	chr7	43992897	44015124
SPDYE1_chr7_43992897_44015124	0/0	t0004	1991	27	3	7	16	1	0	copy fasta	SPDYE1	chr7	43992897	44015124
SPDYE1_chr7_43992897_44015124	0/0	t0005	1991	26	4	13	1	5	3	copy fasta	SPDYE1	chr7	43992897	44015124
SPDYE1_chr7_43992897_44015124	0/0	t0006	1991	21	10	3	5	0	3	copy fasta	SPDYE1	chr7	43992897	44015124
SPDYE1_chr7_43992897_44015124	0/0	t0007	1991	11	11	0	0	0	0	copy fasta	SPDYE1	chr7	43992897	44015124
SPDYE1_chr7_43992897_44015124	0/0	t0008	1985	9	8	1	0	0	0	copy fasta	SPDYE1	chr7	43992897	44015124
SPDYE1_chr7_43992897_44015124	0/0	t0009	1991	5	5	0	0	0	0	copy fasta	SPDYE1	chr7	43992897	44015124
SPDYE1_chr7_43992897_44015124	0/0	t0010	1989	3	2	1	0	0	0	copy fasta	SPDYE1	chr7	43992897	44015124
SPDYE1_chr7_43992897_44015124	0/0	t0011	1991	2	0	2	0	0	0	copy fasta	SPDYE1	chr7	43992897	44015124
SPDYE1_chr7_43992897_44015124	0/0	t0012	1991	2	2	0	0	0	0	copy fasta	SPDYE1	chr7	43992897	44015124
SPDYE1_chr7_43992897_44015124	0/0	t0013	1991	2	0	0	2	0	0	copy fasta	SPDYE1	chr7	43992897	44015124
SPDYE1_chr7_43992897_44015124	0/0	t0014	1991	1	0	0	1	0	0	copy fasta	SPDYE1	chr7	43992897	44015124
SPDYE1_chr7_43992897_44015124	0/0	t0015	1991	1	1	0	0	0	0	copy fasta	SPDYE1	chr7	43992897	44015124
SPDYE1_chr7_43992897_44015124	0/0	t0016	1991	1	0	0	0	1	0	copy fasta	SPDYE1	chr7	43992897	44015124
SPDYE1_chr7_43992897_44015124	0/0	t0017	1991	1	0	0	1	0	0	copy fasta	SPDYE1	chr7	43992897	44015124
SPDYE1_chr7_43992897_44015124	0/0	t0018	1989	1	0	0	1	0	0	copy fasta	SPDYE1	chr7	43992897	44015124
SPDYE1_chr7_43992897_44015124	0/0	t0019	2011	1	0	0	1	0	0	copy fasta	SPDYE1	chr7	43992897	44015124
SPDYE1_chr7_43992897_44015124	0/0	t0020	1991	1	0	0	1	0	0	copy fasta	SPDYE1	chr7	43992897	44015124
SPDYE1_chr7_43992897_44015124	0/0	t0021	1989	1	0	0	1	0	0	copy fasta	SPDYE1	chr7	43992897	44015124
SPDYE1_chr7_43992897_44015124	0/0	t0022	1989	1	0	0	1	0	0	copy fasta	SPDYE1	chr7	43992897	44015124
SPDYE21_chr7_67271941_67294005	0/0	t0001	2077	124	3	21	92	0	8	copy fasta	SPDYE21	chr7	67271941	67294005
SPDYE21_chr7_67271941_67294005	0/1	t0002	2077	98	2	18	64	4	9	copy fasta	SPDYE21	chr7	67271941	67294005