JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SPDYE21_chr7_67271941_67294005	1/0	t0003	2078	69	27	8	17	8	8	copy fasta	SPDYE21	chr7	67271941	67294005
SPDYE21_chr7_67271941_67294005	0/0	t0004	2079	51	10	11	22	2	6	copy fasta	SPDYE21	chr7	67271941	67294005
SPDYE21_chr7_67271941_67294005	0/0	t0005	2077	45	30	5	2	1	7	copy fasta	SPDYE21	chr7	67271941	67294005
SPDYE21_chr7_67271941_67294005	0/0	t0006	2077	21	0	4	12	2	3	copy fasta	SPDYE21	chr7	67271941	67294005
SPDYE21_chr7_67271941_67294005	0/0	t0007	2077	16	13	3	0	0	0	copy fasta	SPDYE21	chr7	67271941	67294005
SPDYE21_chr7_67271941_67294005	0/0	t0008	2078	7	0	5	0	1	1	copy fasta	SPDYE21	chr7	67271941	67294005
SPDYE21_chr7_67271941_67294005	0/0	t0009	2077	6	0	4	0	0	2	copy fasta	SPDYE21	chr7	67271941	67294005
SPDYE21_chr7_67271941_67294005	0/0	t0010	2091	6	6	0	0	0	0	copy fasta	SPDYE21	chr7	67271941	67294005
SPDYE21_chr7_67271941_67294005	0/0	t0011	2077	4	0	0	4	0	0	copy fasta	SPDYE21	chr7	67271941	67294005
SPDYE21_chr7_67271941_67294005	0/0	t0012	2079	3	0	0	0	0	3	copy fasta	SPDYE21	chr7	67271941	67294005
SPDYE21_chr7_67271941_67294005	0/0	t0013	2077	2	2	0	0	0	0	copy fasta	SPDYE21	chr7	67271941	67294005
SPDYE21_chr7_67271941_67294005	0/0	t0014	2079	2	2	0	0	0	0	copy fasta	SPDYE21	chr7	67271941	67294005
SPDYE21_chr7_67271941_67294005	0/0	t0015	2077	1	1	0	0	0	0	copy fasta	SPDYE21	chr7	67271941	67294005
SPDYE21_chr7_67271941_67294005	0/0	t0016	2077	1	1	0	0	0	0	copy fasta	SPDYE21	chr7	67271941	67294005
SPDYE21_chr7_67271941_67294005	0/0	t0017	2077	1	0	1	0	0	0	copy fasta	SPDYE21	chr7	67271941	67294005
SPDYE21_chr7_67271941_67294005	0/0	t0018	2079	1	0	0	0	0	1	copy fasta	SPDYE21	chr7	67271941	67294005
SPDYE21_chr7_67271941_67294005	0/0	t0019	2077	1	1	0	0	0	0	copy fasta	SPDYE21	chr7	67271941	67294005
SPDYE21_chr7_67271941_67294005	0/0	t0020	2078	1	0	0	1	0	0	copy fasta	SPDYE21	chr7	67271941	67294005
SPDYE2B_chr7_102645319_102667625	0/0	t0001	2009	28	5	4	16	1	2	copy fasta	SPDYE2B	chr7	102645319	102667625
SPDYE2B_chr7_102645319_102667625	0/0	t0002	2009	15	2	1	7	2	3	copy fasta	SPDYE2B	chr7	102645319	102667625
SPDYE2B_chr7_102645319_102667625	0/0	t0003	2009	14	1	4	7	2	0	copy fasta	SPDYE2B	chr7	102645319	102667625
SPDYE2B_chr7_102645319_102667625	0/0	t0004	2006	14	0	3	6	0	5	copy fasta	SPDYE2B	chr7	102645319	102667625
SPDYE2B_chr7_102645319_102667625	0/0	t0005	2006	7	6	0	1	0	0	copy fasta	SPDYE2B	chr7	102645319	102667625
SPDYE2B_chr7_102645319_102667625	0/0	t0006	2009	6	0	6	0	0	0	copy fasta	SPDYE2B	chr7	102645319	102667625
SPDYE2B_chr7_102645319_102667625	0/0	t0007	2009	5	0	3	1	0	1	copy fasta	SPDYE2B	chr7	102645319	102667625
SPDYE2B_chr7_102645319_102667625	0/0	t0008	2009	3	0	2	1	0	0	copy fasta	SPDYE2B	chr7	102645319	102667625
SPDYE2B_chr7_102645319_102667625	0/0	t0009	2006	2	2	0	0	0	0	copy fasta	SPDYE2B	chr7	102645319	102667625
SPDYE2B_chr7_102645319_102667625	0/0	t0010	2009	2	2	0	0	0	0	copy fasta	SPDYE2B	chr7	102645319	102667625
SPDYE2B_chr7_102645319_102667625	0/0	t0011	2005	2	2	0	0	0	0	copy fasta	SPDYE2B	chr7	102645319	102667625
SPDYE2B_chr7_102645319_102667625	0/0	t0012	2010	2	0	0	2	0	0	copy fasta	SPDYE2B	chr7	102645319	102667625
SPDYE2B_chr7_102645319_102667625	0/0	t0013	2006	2	2	0	0	0	0	copy fasta	SPDYE2B	chr7	102645319	102667625
SPDYE2B_chr7_102645319_102667625	0/0	t0014	2009	2	0	2	0	0	0	copy fasta	SPDYE2B	chr7	102645319	102667625
SPDYE2B_chr7_102645319_102667625	0/0	t0015	2009	1	0	0	0	0	1	copy fasta	SPDYE2B	chr7	102645319	102667625
SPDYE2B_chr7_102645319_102667625	0/0	t0016	2009	1	0	0	0	0	1	copy fasta	SPDYE2B	chr7	102645319	102667625
SPDYE2B_chr7_102645319_102667625	0/0	t0017	2009	1	0	1	0	0	0	copy fasta	SPDYE2B	chr7	102645319	102667625
SPDYE2B_chr7_102645319_102667625	0/0	t0018	2006	1	1	0	0	0	0	copy fasta	SPDYE2B	chr7	102645319	102667625
SPDYE2B_chr7_102645319_102667625	0/0	t0019	2006	1	0	0	1	0	0	copy fasta	SPDYE2B	chr7	102645319	102667625
SPDYE2B_chr7_102645319_102667625	0/0	t0020	2006	1	0	1	0	0	0	copy fasta	SPDYE2B	chr7	102645319	102667625
SPDYE2B_chr7_102645319_102667625	0/0	t0021	2009	1	0	0	1	0	0	copy fasta	SPDYE2B	chr7	102645319	102667625
SPDYE2B_chr7_102645319_102667625	0/0	t0022	2009	1	0	0	1	0	0	copy fasta	SPDYE2B	chr7	102645319	102667625
SPDYE2B_chr7_102645319_102667625	0/0	t0023	2010	1	1	0	0	0	0	copy fasta	SPDYE2B	chr7	102645319	102667625
SPDYE2B_chr7_102645319_102667625	0/0	t0024	2007	1	0	0	1	0	0	copy fasta	SPDYE2B	chr7	102645319	102667625
SPDYE2B_chr7_102645319_102667625	0/0	t0025	2010	1	1	0	0	0	0	copy fasta	SPDYE2B	chr7	102645319	102667625
SPDYE2B_chr7_102645319_102667625	0/0	t0026	2006	1	1	0	0	0	0	copy fasta	SPDYE2B	chr7	102645319	102667625
SPDYE2B_chr7_102645319_102667625	0/0	t0027	2006	1	1	0	0	0	0	copy fasta	SPDYE2B	chr7	102645319	102667625
SPDYE2B_chr7_102645319_102667625	0/0	t0028	2006	1	0	0	1	0	0	copy fasta	SPDYE2B	chr7	102645319	102667625
SPDYE2B_chr7_102645319_102667625	0/0	t0029	2010	1	1	0	0	0	0	copy fasta	SPDYE2B	chr7	102645319	102667625
SPDYE2B_chr7_102645319_102667625	0/0	t0030	2010	1	0	0	0	0	1	copy fasta	SPDYE2B	chr7	102645319	102667625
SPDYE2B_chr7_102645319_102667625	0/0	t0031	2009	1	1	0	0	0	0	copy fasta	SPDYE2B	chr7	102645319	102667625
SPDYE2B_chr7_102645319_102667625	0/0	t0032	2009	1	1	0	0	0	0	copy fasta	SPDYE2B	chr7	102645319	102667625