JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SPDYE2B_chr7_102645319_102667625	0/0	t0033	2006	1	0	0	0	0	1	copy fasta	SPDYE2B	chr7	102645319	102667625
SPDYE2B_chr7_102645319_102667625	0/0	t0034	2006	1	0	1	0	0	0	copy fasta	SPDYE2B	chr7	102645319	102667625
SPDYE2B_chr7_102645319_102667625	0/0	t0035	2006	1	0	0	0	0	1	copy fasta	SPDYE2B	chr7	102645319	102667625
SPDYE2B_chr7_102645319_102667625	0/0	t0036	2009	1	0	0	0	1	0	copy fasta	SPDYE2B	chr7	102645319	102667625
SPDYE2B_chr7_102645319_102667625	0/0	t0037	2006	1	1	0	0	0	0	copy fasta	SPDYE2B	chr7	102645319	102667625
SPDYE2B_chr7_102645319_102667625	0/0	t0038	2005	1	1	0	0	0	0	copy fasta	SPDYE2B	chr7	102645319	102667625
SPDYE2_chr7_102546226_102568538	0/0	t0001	2013	46	5	10	24	2	5	copy fasta	SPDYE2	chr7	102546226	102568538
SPDYE2_chr7_102546226_102568538	0/0	t0002	2013	37	4	10	15	5	3	copy fasta	SPDYE2	chr7	102546226	102568538
SPDYE2_chr7_102546226_102568538	0/0	t0003	2013	26	5	3	12	1	5	copy fasta	SPDYE2	chr7	102546226	102568538
SPDYE2_chr7_102546226_102568538	0/0	t0004	2013	11	2	2	6	1	0	copy fasta	SPDYE2	chr7	102546226	102568538
SPDYE2_chr7_102546226_102568538	0/0	t0005	2012	4	1	2	1	0	0	copy fasta	SPDYE2	chr7	102546226	102568538
SPDYE2_chr7_102546226_102568538	0/0	t0006	2013	4	3	1	0	0	0	copy fasta	SPDYE2	chr7	102546226	102568538
SPDYE2_chr7_102546226_102568538	0/0	t0007	2010	4	0	2	2	0	0	copy fasta	SPDYE2	chr7	102546226	102568538
SPDYE2_chr7_102546226_102568538	0/0	t0008	2013	3	2	0	0	0	1	copy fasta	SPDYE2	chr7	102546226	102568538
SPDYE2_chr7_102546226_102568538	0/0	t0009	2010	3	0	2	0	0	1	copy fasta	SPDYE2	chr7	102546226	102568538
SPDYE2_chr7_102546226_102568538	0/0	t0010	2013	2	0	0	0	0	2	copy fasta	SPDYE2	chr7	102546226	102568538
SPDYE2_chr7_102546226_102568538	0/0	t0011	2013	2	0	0	2	0	0	copy fasta	SPDYE2	chr7	102546226	102568538
SPDYE2_chr7_102546226_102568538	0/0	t0012	2013	2	0	0	2	0	0	copy fasta	SPDYE2	chr7	102546226	102568538
SPDYE2_chr7_102546226_102568538	0/0	t0013	2010	2	2	0	0	0	0	copy fasta	SPDYE2	chr7	102546226	102568538
SPDYE2_chr7_102546226_102568538	0/0	t0014	2010	2	1	0	1	0	0	copy fasta	SPDYE2	chr7	102546226	102568538
SPDYE2_chr7_102546226_102568538	0/0	t0015	2012	2	1	0	1	0	0	copy fasta	SPDYE2	chr7	102546226	102568538
SPDYE2_chr7_102546226_102568538	0/0	t0016	2042	1	1	0	0	0	0	copy fasta	SPDYE2	chr7	102546226	102568538
SPDYE2_chr7_102546226_102568538	0/0	t0017	2013	1	0	0	1	0	0	copy fasta	SPDYE2	chr7	102546226	102568538
SPDYE2_chr7_102546226_102568538	0/0	t0018	2013	1	0	0	1	0	0	copy fasta	SPDYE2	chr7	102546226	102568538
SPDYE2_chr7_102546226_102568538	0/0	t0019	2013	1	0	0	0	0	1	copy fasta	SPDYE2	chr7	102546226	102568538
SPDYE2_chr7_102546226_102568538	0/0	t0020	2013	1	1	0	0	0	0	copy fasta	SPDYE2	chr7	102546226	102568538
SPDYE2_chr7_102546226_102568538	0/0	t0021	2013	1	1	0	0	0	0	copy fasta	SPDYE2	chr7	102546226	102568538
SPDYE2_chr7_102546226_102568538	0/0	t0022	2013	1	0	1	0	0	0	copy fasta	SPDYE2	chr7	102546226	102568538
SPDYE2_chr7_102546226_102568538	0/0	t0023	2012	1	0	0	1	0	0	copy fasta	SPDYE2	chr7	102546226	102568538
SPDYE2_chr7_102546226_102568538	0/0	t0024	2013	1	1	0	0	0	0	copy fasta	SPDYE2	chr7	102546226	102568538
SPDYE2_chr7_102546226_102568538	0/0	t0025	2013	1	0	0	0	0	1	copy fasta	SPDYE2	chr7	102546226	102568538
SPDYE2_chr7_102546226_102568538	0/0	t0026	2013	1	0	0	0	0	1	copy fasta	SPDYE2	chr7	102546226	102568538
SPDYE2_chr7_102546226_102568538	0/0	t0027	2013	1	0	0	1	0	0	copy fasta	SPDYE2	chr7	102546226	102568538
SPDYE2_chr7_102546226_102568538	0/0	t0028	2013	1	0	0	0	1	0	copy fasta	SPDYE2	chr7	102546226	102568538
SPDYE2_chr7_102546226_102568538	0/0	t0029	2013	1	0	1	0	0	0	copy fasta	SPDYE2	chr7	102546226	102568538
SPDYE3_chr7_100302702_100327196	1/1	t0001	1536	262	55	50	115	10	30	copy fasta	SPDYE3	chr7	100302702	100327196
SPDYE3_chr7_100302702_100327196	0/0	t0002	1536	19	10	5	0	1	3	copy fasta	SPDYE3	chr7	100302702	100327196
SPDYE3_chr7_100302702_100327196	0/0	t0003	1532	18	0	6	5	2	5	copy fasta	SPDYE3	chr7	100302702	100327196
SPDYE3_chr7_100302702_100327196	0/0	t0004	1535	16	16	0	0	0	0	copy fasta	SPDYE3	chr7	100302702	100327196
SPDYE3_chr7_100302702_100327196	0/0	t0005	1536	11	0	0	6	2	3	copy fasta	SPDYE3	chr7	100302702	100327196
SPDYE3_chr7_100302702_100327196	0/0	t0006	1536	3	0	0	3	0	0	copy fasta	SPDYE3	chr7	100302702	100327196
SPDYE3_chr7_100302702_100327196	0/0	t0007	1535	3	3	0	0	0	0	copy fasta	SPDYE3	chr7	100302702	100327196
SPDYE3_chr7_100302702_100327196	0/0	t0008	1532	3	0	1	2	0	0	copy fasta	SPDYE3	chr7	100302702	100327196
SPDYE3_chr7_100302702_100327196	0/0	t0009	1528	3	0	0	3	0	0	copy fasta	SPDYE3	chr7	100302702	100327196
SPDYE3_chr7_100302702_100327196	0/0	t0010	1536	2	2	0	0	0	0	copy fasta	SPDYE3	chr7	100302702	100327196
SPDYE3_chr7_100302702_100327196	0/0	t0011	1536	1	1	0	0	0	0	copy fasta	SPDYE3	chr7	100302702	100327196
SPDYE3_chr7_100302702_100327196	0/0	t0012	1507	1	0	0	0	0	1	copy fasta	SPDYE3	chr7	100302702	100327196
SPDYE3_chr7_100302702_100327196	0/0	t0013	1536	1	1	0	0	0	0	copy fasta	SPDYE3	chr7	100302702	100327196
SPDYE3_chr7_100302702_100327196	0/0	t0014	1536	1	0	0	0	1	0	copy fasta	SPDYE3	chr7	100302702	100327196
SPDYE4_chr17_8745853_8763546	1/0	t0001	1594	224	15	39	146	4	19	copy fasta	SPDYE4	chr17	8745853	8763546