JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SPDYE4_chr17_8745853_8763546	0/0	t0002	1594	95	14	25	34	6	16	copy fasta	SPDYE4	chr17	8745853	8763546
SPDYE4_chr17_8745853_8763546	0/1	t0003	1594	45	35	7	0	2	0	copy fasta	SPDYE4	chr17	8745853	8763546
SPDYE4_chr17_8745853_8763546	0/0	t0004	1594	12	6	1	0	4	1	copy fasta	SPDYE4	chr17	8745853	8763546
SPDYE4_chr17_8745853_8763546	0/0	t0005	1594	9	8	1	0	0	0	copy fasta	SPDYE4	chr17	8745853	8763546
SPDYE4_chr17_8745853_8763546	0/0	t0006	1594	8	7	1	0	0	0	copy fasta	SPDYE4	chr17	8745853	8763546
SPDYE4_chr17_8745853_8763546	0/0	t0007	1594	6	6	0	0	0	0	copy fasta	SPDYE4	chr17	8745853	8763546
SPDYE4_chr17_8745853_8763546	0/0	t0008	1594	4	0	0	4	0	0	copy fasta	SPDYE4	chr17	8745853	8763546
SPDYE4_chr17_8745853_8763546	0/0	t0009	1594	2	0	0	2	0	0	copy fasta	SPDYE4	chr17	8745853	8763546
SPDYE4_chr17_8745853_8763546	0/0	t0010	1594	2	2	0	0	0	0	copy fasta	SPDYE4	chr17	8745853	8763546
SPDYE4_chr17_8745853_8763546	0/0	t0011	1594	2	2	0	0	0	0	copy fasta	SPDYE4	chr17	8745853	8763546
SPDYE4_chr17_8745853_8763546	0/0	t0012	1594	2	0	2	0	0	0	copy fasta	SPDYE4	chr17	8745853	8763546
SPDYE4_chr17_8745853_8763546	0/0	t0013	1594	1	1	0	0	0	0	copy fasta	SPDYE4	chr17	8745853	8763546
SPDYE4_chr17_8745853_8763546	0/0	t0014	1594	1	0	0	0	0	1	copy fasta	SPDYE4	chr17	8745853	8763546
SPDYE4_chr17_8745853_8763546	0/0	t0015	1594	1	1	0	0	0	0	copy fasta	SPDYE4	chr17	8745853	8763546
SPDYE4_chr17_8745853_8763546	0/0	t0016	1594	1	0	0	0	0	1	copy fasta	SPDYE4	chr17	8745853	8763546
SPDYE4_chr17_8745853_8763546	0/0	t0017	1594	1	1	0	0	0	0	copy fasta	SPDYE4	chr17	8745853	8763546
SPDYE4_chr17_8745853_8763546	0/0	t0018	1594	1	0	0	1	0	0	copy fasta	SPDYE4	chr17	8745853	8763546
SPDYE4_chr17_8745853_8763546	0/0	t0019	1594	1	0	0	1	0	0	copy fasta	SPDYE4	chr17	8745853	8763546
SPDYE5_chr7_75487320_75509316	0/1	t0001	2073	188	6	44	107	8	22	copy fasta	SPDYE5	chr7	75487320	75509316
SPDYE5_chr7_75487320_75509316	0/0	t0002	2073	66	28	19	2	8	9	copy fasta	SPDYE5	chr7	75487320	75509316
SPDYE5_chr7_75487320_75509316	1/0	t0003	2073	32	6	8	10	0	7	copy fasta	SPDYE5	chr7	75487320	75509316
SPDYE5_chr7_75487320_75509316	0/0	t0004	2073	27	23	4	0	0	0	copy fasta	SPDYE5	chr7	75487320	75509316
SPDYE5_chr7_75487320_75509316	0/0	t0005	2073	26	0	0	26	0	0	copy fasta	SPDYE5	chr7	75487320	75509316
SPDYE5_chr7_75487320_75509316	0/0	t0006	2073	13	0	0	13	0	0	copy fasta	SPDYE5	chr7	75487320	75509316
SPDYE5_chr7_75487320_75509316	0/0	t0007	2073	9	9	0	0	0	0	copy fasta	SPDYE5	chr7	75487320	75509316
SPDYE5_chr7_75487320_75509316	0/0	t0008	2073	9	0	5	0	2	2	copy fasta	SPDYE5	chr7	75487320	75509316
SPDYE5_chr7_75487320_75509316	0/0	t0009	2073	6	2	0	3	0	1	copy fasta	SPDYE5	chr7	75487320	75509316
SPDYE5_chr7_75487320_75509316	0/0	t0010	2073	4	4	0	0	0	0	copy fasta	SPDYE5	chr7	75487320	75509316
SPDYE5_chr7_75487320_75509316	0/0	t0011	2073	4	4	0	0	0	0	copy fasta	SPDYE5	chr7	75487320	75509316
SPDYE5_chr7_75487320_75509316	0/0	t0012	2073	3	3	0	0	0	0	copy fasta	SPDYE5	chr7	75487320	75509316
SPDYE5_chr7_75487320_75509316	0/0	t0013	2073	3	1	2	0	0	0	copy fasta	SPDYE5	chr7	75487320	75509316
SPDYE5_chr7_75487320_75509316	0/0	t0014	2073	3	0	1	2	0	0	copy fasta	SPDYE5	chr7	75487320	75509316
SPDYE5_chr7_75487320_75509316	0/0	t0015	2073	2	2	0	0	0	0	copy fasta	SPDYE5	chr7	75487320	75509316
SPDYE5_chr7_75487320_75509316	0/0	t0016	2073	1	1	0	0	0	0	copy fasta	SPDYE5	chr7	75487320	75509316
SPDYE5_chr7_75487320_75509316	0/0	t0017	2073	1	0	0	1	0	0	copy fasta	SPDYE5	chr7	75487320	75509316
SPDYE5_chr7_75487320_75509316	0/0	t0018	2073	1	1	0	0	0	0	copy fasta	SPDYE5	chr7	75487320	75509316
SPDYE5_chr7_75487320_75509316	0/0	t0019	2073	1	0	0	1	0	0	copy fasta	SPDYE5	chr7	75487320	75509316
SPDYE5_chr7_75487320_75509316	0/0	t0020	2073	1	0	0	1	0	0	copy fasta	SPDYE5	chr7	75487320	75509316
SPDYE5_chr7_75487320_75509316	0/0	t0021	2073	1	0	0	0	0	1	copy fasta	SPDYE5	chr7	75487320	75509316
SPDYE5_chr7_75487320_75509316	0/0	t0022	2073	1	0	1	0	0	0	copy fasta	SPDYE5	chr7	75487320	75509316
SPDYE5_chr7_75487320_75509316	0/0	t0023	2073	1	0	0	1	0	0	copy fasta	SPDYE5	chr7	75487320	75509316
SPDYE5_chr7_75487320_75509316	0/0	t0024	2083	1	1	0	0	0	0	copy fasta	SPDYE5	chr7	75487320	75509316
SPDYE5_chr7_75487320_75509316	0/0	t0025	2073	1	1	0	0	0	0	copy fasta	SPDYE5	chr7	75487320	75509316
SPDYE5_chr7_75487320_75509316	0/0	t0026	2073	1	0	0	1	0	0	copy fasta	SPDYE5	chr7	75487320	75509316
SPDYE5_chr7_75487320_75509316	0/0	t0027	2073	1	1	0	0	0	0	copy fasta	SPDYE5	chr7	75487320	75509316
SPDYE5_chr7_75487320_75509316	0/0	t0028	2073	1	1	0	0	0	0	copy fasta	SPDYE5	chr7	75487320	75509316
SPDYE6_chr7_102340746_102361444	0/0	t0001	1943	152	18	24	85	7	18	copy fasta	SPDYE6	chr7	102340746	102361444
SPDYE6_chr7_102340746_102361444	0/0	t0002	1943	105	15	25	55	3	7	copy fasta	SPDYE6	chr7	102340746	102361444
SPDYE6_chr7_102340746_102361444	0/0	t0003	1972	102	20	15	53	2	12	copy fasta	SPDYE6	chr7	102340746	102361444
SPDYE6_chr7_102340746_102361444	0/0	t0004	1943	21	8	9	0	2	2	copy fasta	SPDYE6	chr7	102340746	102361444