JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SPDYE6_chr7_102340746_102361444	0/0	t0005	1943	10	10	0	0	0	0	copy fasta	SPDYE6	chr7	102340746	102361444
SPDYE6_chr7_102340746_102361444	0/0	t0006	1943	7	7	0	0	0	0	copy fasta	SPDYE6	chr7	102340746	102361444
SPDYE6_chr7_102340746_102361444	0/0	t0007	1943	7	3	1	0	0	3	copy fasta	SPDYE6	chr7	102340746	102361444
SPDYE6_chr7_102340746_102361444	0/0	t0008	1943	6	0	2	0	0	4	copy fasta	SPDYE6	chr7	102340746	102361444
SPDYE6_chr7_102340746_102361444	0/0	t0009	1943	3	3	0	0	0	0	copy fasta	SPDYE6	chr7	102340746	102361444
SPDYE6_chr7_102340746_102361444	0/0	t0010	1943	3	0	0	3	0	0	copy fasta	SPDYE6	chr7	102340746	102361444
SPDYE6_chr7_102340746_102361444	0/0	t0011	1943	2	2	0	0	0	0	copy fasta	SPDYE6	chr7	102340746	102361444
SPDYE6_chr7_102340746_102361444	0/0	t0012	1943	2	2	0	0	0	0	copy fasta	SPDYE6	chr7	102340746	102361444
SPDYE6_chr7_102340746_102361444	0/0	t0013	1943	2	2	0	0	0	0	copy fasta	SPDYE6	chr7	102340746	102361444
SPDYE6_chr7_102340746_102361444	0/0	t0014	1943	1	0	1	0	0	0	copy fasta	SPDYE6	chr7	102340746	102361444
SPDYE6_chr7_102340746_102361444	0/0	t0015	1972	1	0	0	0	1	0	copy fasta	SPDYE6	chr7	102340746	102361444
SPDYE6_chr7_102340746_102361444	0/0	t0016	1943	1	1	0	0	0	0	copy fasta	SPDYE6	chr7	102340746	102361444
SPDYE6_chr7_102340746_102361444	0/0	t0017	1943	1	0	0	1	0	0	copy fasta	SPDYE6	chr7	102340746	102361444
SPDYE6_chr7_102340746_102361444	1/0	t0018	1943	1	0	0	0	0	0	copy fasta	SPDYE6	chr7	102340746	102361444
SPDYE6_chr7_102340746_102361444	0/0	t0019	1943	1	0	0	0	1	0	copy fasta	SPDYE6	chr7	102340746	102361444
SPDYE6_chr7_102340746_102361444	0/0	t0020	1943	1	0	0	0	0	1	copy fasta	SPDYE6	chr7	102340746	102361444
SPDYE6_chr7_102340746_102361444	0/0	t0021	1943	1	0	1	0	0	0	copy fasta	SPDYE6	chr7	102340746	102361444
SPDYE6_chr7_102340746_102361444	0/0	t0022	1943	1	0	0	0	1	0	copy fasta	SPDYE6	chr7	102340746	102361444
SPDYE6_chr7_102340746_102361444	0/0	t0023	1943	1	0	0	1	0	0	copy fasta	SPDYE6	chr7	102340746	102361444
SPDYE6_chr7_102340746_102361444	0/0	t0024	1972	1	0	0	1	0	0	copy fasta	SPDYE6	chr7	102340746	102361444
SPDYE6_chr7_102340746_102361444	0/0	t0025	1943	1	0	0	1	0	0	copy fasta	SPDYE6	chr7	102340746	102361444
SPDYE6_chr7_102340746_102361444	0/0	t0026	1943	1	0	1	0	0	0	copy fasta	SPDYE6	chr7	102340746	102361444
SPDYE6_chr7_102340746_102361444	0/0	t0027	1943	1	0	0	0	0	1	copy fasta	SPDYE6	chr7	102340746	102361444
SPDYE6_chr7_102340746_102361444	0/0	t0028	1943	1	1	0	0	0	0	copy fasta	SPDYE6	chr7	102340746	102361444
SPDYE6_chr7_102340746_102361444	0/0	t0029	1943	1	0	0	0	1	0	copy fasta	SPDYE6	chr7	102340746	102361444
SPDYE6_chr7_102340746_102361444	0/0	t0030	1943	1	0	1	0	0	0	copy fasta	SPDYE6	chr7	102340746	102361444
SPDYE8_chr7_73014719_73034766	0/0	t0001	2103	87	17	17	39	4	10	copy fasta	SPDYE8	chr7	73014719	73034766
SPDYE8_chr7_73014719_73034766	0/0	t0002	2103	8	1	1	5	0	1	copy fasta	SPDYE8	chr7	73014719	73034766
SPDYE8_chr7_73014719_73034766	0/0	t0003	2103	7	4	1	1	0	1	copy fasta	SPDYE8	chr7	73014719	73034766
SPDYE8_chr7_73014719_73034766	0/0	t0004	2103	5	0	3	0	0	2	copy fasta	SPDYE8	chr7	73014719	73034766
SPDYE8_chr7_73014719_73034766	0/0	t0005	2100	4	0	1	0	1	2	copy fasta	SPDYE8	chr7	73014719	73034766
SPDYE8_chr7_73014719_73034766	0/0	t0006	2103	4	4	0	0	0	0	copy fasta	SPDYE8	chr7	73014719	73034766
SPDYE8_chr7_73014719_73034766	0/0	t0007	2103	3	1	0	1	1	0	copy fasta	SPDYE8	chr7	73014719	73034766
SPDYE8_chr7_73014719_73034766	0/0	t0008	2100	3	3	0	0	0	0	copy fasta	SPDYE8	chr7	73014719	73034766
SPDYE8_chr7_73014719_73034766	0/0	t0009	2103	3	2	1	0	0	0	copy fasta	SPDYE8	chr7	73014719	73034766
SPDYE8_chr7_73014719_73034766	0/0	t0010	2103	2	0	0	2	0	0	copy fasta	SPDYE8	chr7	73014719	73034766
SPDYE8_chr7_73014719_73034766	0/0	t0011	2104	1	0	0	0	1	0	copy fasta	SPDYE8	chr7	73014719	73034766
SPDYE8_chr7_73014719_73034766	0/0	t0012	2104	1	0	0	1	0	0	copy fasta	SPDYE8	chr7	73014719	73034766
SPDYE8_chr7_73014719_73034766	0/0	t0013	2103	1	1	0	0	0	0	copy fasta	SPDYE8	chr7	73014719	73034766
SPDYE8_chr7_73014719_73034766	0/0	t0014	2103	1	0	0	1	0	0	copy fasta	SPDYE8	chr7	73014719	73034766
SPDYE8_chr7_73014719_73034766	0/0	t0015	2100	1	0	0	0	1	0	copy fasta	SPDYE8	chr7	73014719	73034766
SPDYE8_chr7_73014719_73034766	0/0	t0016	2103	1	1	0	0	0	0	copy fasta	SPDYE8	chr7	73014719	73034766
SPDYE8_chr7_73014719_73034766	0/0	t0017	2103	1	0	0	0	0	1	copy fasta	SPDYE8	chr7	73014719	73034766
SPDYE8_chr7_73014719_73034766	0/0	t0018	2103	1	0	0	1	0	0	copy fasta	SPDYE8	chr7	73014719	73034766
SPDYE8_chr7_73014719_73034766	0/0	t0019	2103	1	0	0	0	0	1	copy fasta	SPDYE8	chr7	73014719	73034766
SPDYE8_chr7_73014719_73034766	0/0	t0020	2103	1	1	0	0	0	0	copy fasta	SPDYE8	chr7	73014719	73034766
SPDYE8_chr7_73014719_73034766	0/0	t0021	2103	1	1	0	0	0	0	copy fasta	SPDYE8	chr7	73014719	73034766
SPDYE8_chr7_73014719_73034766	0/0	t0022	2103	1	0	0	1	0	0	copy fasta	SPDYE8	chr7	73014719	73034766
SPDYE9_chr7_73070972_73091038	0/0	t0001	2103	39	5	7	21	2	4	copy fasta	SPDYE9	chr7	73070972	73091038
SPDYE9_chr7_73070972_73091038	0/0	t0002	2103	34	1	6	22	0	5	copy fasta	SPDYE9	chr7	73070972	73091038