JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SPDYE9_chr7_73070972_73091038	0/0	t0003	2103	27	1	7	17	1	1	copy fasta	SPDYE9	chr7	73070972	73091038
SPDYE9_chr7_73070972_73091038	0/0	t0004	2103	20	2	1	13	1	3	copy fasta	SPDYE9	chr7	73070972	73091038
SPDYE9_chr7_73070972_73091038	0/0	t0005	2103	13	0	2	9	2	0	copy fasta	SPDYE9	chr7	73070972	73091038
SPDYE9_chr7_73070972_73091038	0/0	t0006	2103	9	5	4	0	0	0	copy fasta	SPDYE9	chr7	73070972	73091038
SPDYE9_chr7_73070972_73091038	0/0	t0007	2103	5	4	1	0	0	0	copy fasta	SPDYE9	chr7	73070972	73091038
SPDYE9_chr7_73070972_73091038	0/0	t0008	2103	4	1	1	1	0	1	copy fasta	SPDYE9	chr7	73070972	73091038
SPDYE9_chr7_73070972_73091038	0/0	t0009	2103	2	1	1	0	0	0	copy fasta	SPDYE9	chr7	73070972	73091038
SPDYE9_chr7_73070972_73091038	0/0	t0010	2103	2	0	0	2	0	0	copy fasta	SPDYE9	chr7	73070972	73091038
SPDYE9_chr7_73070972_73091038	0/0	t0011	2103	1	1	0	0	0	0	copy fasta	SPDYE9	chr7	73070972	73091038
SPDYE9_chr7_73070972_73091038	0/0	t0012	2103	1	1	0	0	0	0	copy fasta	SPDYE9	chr7	73070972	73091038
SPDYE9_chr7_73070972_73091038	0/0	t0013	2103	1	1	0	0	0	0	copy fasta	SPDYE9	chr7	73070972	73091038
SPDYE9_chr7_73070972_73091038	0/0	t0014	2103	1	0	0	1	0	0	copy fasta	SPDYE9	chr7	73070972	73091038
SPDYE9_chr7_73070972_73091038	0/0	t0015	2103	1	0	1	0	0	0	copy fasta	SPDYE9	chr7	73070972	73091038
SPDYE9_chr7_73070972_73091038	0/0	t0016	2103	1	1	0	0	0	0	copy fasta	SPDYE9	chr7	73070972	73091038
SPDYE9_chr7_73070972_73091038	0/0	t0017	2103	1	1	0	0	0	0	copy fasta	SPDYE9	chr7	73070972	73091038
SPDYE9_chr7_73070972_73091038	0/0	t0018	2103	1	0	1	0	0	0	copy fasta	SPDYE9	chr7	73070972	73091038
SPDYE9_chr7_73070972_73091038	0/0	t0019	1528	1	1	0	0	0	0	copy fasta	SPDYE9	chr7	73070972	73091038
SPECC1L_chr22_24265831_24422738	1/1	t0001	3410	100	14	22	50	4	8	copy fasta	SPECC1L	chr22	24265831	24422738
SPECC1L_chr22_24265831_24422738	0/0	t0002	3410	71	20	9	34	3	5	copy fasta	SPECC1L	chr22	24265831	24422738
SPECC1L_chr22_24265831_24422738	0/0	t0003	3410	46	1	11	28	2	4	copy fasta	SPECC1L	chr22	24265831	24422738
SPECC1L_chr22_24265831_24422738	0/0	t0004	3410	21	0	0	18	0	3	copy fasta	SPECC1L	chr22	24265831	24422738
SPECC1L_chr22_24265831_24422738	0/0	t0005	3410	10	8	2	0	0	0	copy fasta	SPECC1L	chr22	24265831	24422738
SPECC1L_chr22_24265831_24422738	0/0	t0006	3410	9	0	0	9	0	0	copy fasta	SPECC1L	chr22	24265831	24422738
SPECC1L_chr22_24265831_24422738	0/0	t0007	3408	7	7	0	0	0	0	copy fasta	SPECC1L	chr22	24265831	24422738
SPECC1L_chr22_24265831_24422738	0/0	t0008	3410	6	0	0	0	0	6	copy fasta	SPECC1L	chr22	24265831	24422738
SPECC1L_chr22_24265831_24422738	0/0	t0009	3408	6	5	1	0	0	0	copy fasta	SPECC1L	chr22	24265831	24422738
SPECC1L_chr22_24265831_24422738	0/0	t0010	3408	5	0	0	5	0	0	copy fasta	SPECC1L	chr22	24265831	24422738
SPECC1L_chr22_24265831_24422738	0/0	t0011	3410	4	0	1	3	0	0	copy fasta	SPECC1L	chr22	24265831	24422738
SPECC1L_chr22_24265831_24422738	0/0	t0012	3408	4	4	0	0	0	0	copy fasta	SPECC1L	chr22	24265831	24422738
SPECC1L_chr22_24265831_24422738	0/0	t0013	3410	3	2	0	1	0	0	copy fasta	SPECC1L	chr22	24265831	24422738
SPECC1L_chr22_24265831_24422738	0/0	t0014	3410	3	0	0	3	0	0	copy fasta	SPECC1L	chr22	24265831	24422738
SPECC1L_chr22_24265831_24422738	0/0	t0015	3410	2	2	0	0	0	0	copy fasta	SPECC1L	chr22	24265831	24422738
SPECC1L_chr22_24265831_24422738	0/0	t0016	3410	2	0	0	2	0	0	copy fasta	SPECC1L	chr22	24265831	24422738
SPECC1L_chr22_24265831_24422738	0/0	t0017	3410	1	1	0	0	0	0	copy fasta	SPECC1L	chr22	24265831	24422738
SPECC1L_chr22_24265831_24422738	0/0	t0018	3410	1	1	0	0	0	0	copy fasta	SPECC1L	chr22	24265831	24422738
SPECC1L_chr22_24265831_24422738	0/0	t0019	3410	1	0	0	0	0	1	copy fasta	SPECC1L	chr22	24265831	24422738
SPECC1L_chr22_24265831_24422738	0/0	t0020	3421	1	0	0	0	0	1	copy fasta	SPECC1L	chr22	24265831	24422738
SPECC1L_chr22_24265831_24422738	0/0	t0021	3410	1	1	0	0	0	0	copy fasta	SPECC1L	chr22	24265831	24422738
SPECC1L_chr22_24265831_24422738	0/0	t0022	3410	1	0	0	0	0	1	copy fasta	SPECC1L	chr22	24265831	24422738
SPECC1L_chr22_24265831_24422738	0/0	t0023	3410	1	1	0	0	0	0	copy fasta	SPECC1L	chr22	24265831	24422738
SPECC1L_chr22_24265831_24422738	0/0	t0024	3410	1	1	0	0	0	0	copy fasta	SPECC1L	chr22	24265831	24422738
SPECC1L_chr22_24265831_24422738	0/0	t0025	3410	1	0	0	1	0	0	copy fasta	SPECC1L	chr22	24265831	24422738
SPECC1L_chr22_24265831_24422738	0/0	t0026	3408	1	1	0	0	0	0	copy fasta	SPECC1L	chr22	24265831	24422738
SPECC1L_chr22_24265831_24422738	0/0	t0027	3410	1	0	0	0	1	0	copy fasta	SPECC1L	chr22	24265831	24422738
SPECC1L_chr22_24265831_24422738	0/0	t0028	3410	1	0	0	1	0	0	copy fasta	SPECC1L	chr22	24265831	24422738
SPECC1L_chr22_24265831_24422738	0/0	t0029	3410	1	1	0	0	0	0	copy fasta	SPECC1L	chr22	24265831	24422738
SPECC1L_chr22_24265831_24422738	0/0	t0030	3410	1	1	0	0	0	0	copy fasta	SPECC1L	chr22	24265831	24422738
SPECC1L_chr22_24265831_24422738	0/0	t0031	3410	1	0	1	0	0	0	copy fasta	SPECC1L	chr22	24265831	24422738
SPECC1L_chr22_24265831_24422738	0/0	t0032	3410	1	1	0	0	0	0	copy fasta	SPECC1L	chr22	24265831	24422738
SPECC1L_chr22_24265831_24422738	0/0	t0033	3410	1	0	1	0	0	0	copy fasta	SPECC1L	chr22	24265831	24422738