JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SPECC1L_chr22_24265831_24422738	0/0	t0034	3410	1	0	0	1	0	0	copy fasta	SPECC1L	chr22	24265831	24422738
SPECC1L_chr22_24265831_24422738	0/0	t0035	3410	1	0	1	0	0	0	copy fasta	SPECC1L	chr22	24265831	24422738
SPECC1L_chr22_24265831_24422738	0/0	t0036	3410	1	1	0	0	0	0	copy fasta	SPECC1L	chr22	24265831	24422738
SPECC1L_chr22_24265831_24422738	0/0	t0037	3410	1	0	0	1	0	0	copy fasta	SPECC1L	chr22	24265831	24422738
SPECC1L_chr22_24265831_24422738	0/0	t0038	3410	1	0	1	0	0	0	copy fasta	SPECC1L	chr22	24265831	24422738
SPECC1L_chr22_24265831_24422738	0/0	t0039	3410	1	0	0	0	0	1	copy fasta	SPECC1L	chr22	24265831	24422738
SPECC1L_chr22_24265831_24422738	0/0	t0040	3410	1	0	1	0	0	0	copy fasta	SPECC1L	chr22	24265831	24422738
SPECC1L_chr22_24265831_24422738	0/0	t0041	3410	1	0	0	1	0	0	copy fasta	SPECC1L	chr22	24265831	24422738
SPECC1L_chr22_24265831_24422738	0/0	t0042	3410	1	1	0	0	0	0	copy fasta	SPECC1L	chr22	24265831	24422738
SPECC1L_chr22_24265831_24422738	0/0	t0043	3410	1	0	1	0	0	0	copy fasta	SPECC1L	chr22	24265831	24422738
SPECC1_chr17_20004359_20324026	0/1	t0001	5049	30	0	14	3	4	8	copy fasta	SPECC1	chr17	20004359	20324026
SPECC1_chr17_20004359_20324026	0/0	t0002	5064	21	1	6	8	1	5	copy fasta	SPECC1	chr17	20004359	20324026
SPECC1_chr17_20004359_20324026	0/0	t0003	5055	17	0	7	7	2	1	copy fasta	SPECC1	chr17	20004359	20324026
SPECC1_chr17_20004359_20324026	0/0	t0004	5063	11	0	3	6	2	0	copy fasta	SPECC1	chr17	20004359	20324026
SPECC1_chr17_20004359_20324026	0/0	t0005	5055	9	4	1	0	3	1	copy fasta	SPECC1	chr17	20004359	20324026
SPECC1_chr17_20004359_20324026	0/0	t0006	5065	9	0	3	3	1	2	copy fasta	SPECC1	chr17	20004359	20324026
SPECC1_chr17_20004359_20324026	0/0	t0007	5056	6	6	0	0	0	0	copy fasta	SPECC1	chr17	20004359	20324026
SPECC1_chr17_20004359_20324026	0/0	t0008	5059	5	0	0	5	0	0	copy fasta	SPECC1	chr17	20004359	20324026
SPECC1_chr17_20004359_20324026	0/0	t0009	5060	4	0	0	4	0	0	copy fasta	SPECC1	chr17	20004359	20324026
SPECC1_chr17_20004359_20324026	0/0	t0010	5066	4	0	0	4	0	0	copy fasta	SPECC1	chr17	20004359	20324026
SPECC1_chr17_20004359_20324026	0/0	t0011	5056	4	0	3	1	0	0	copy fasta	SPECC1	chr17	20004359	20324026
SPECC1_chr17_20004359_20324026	0/0	t0012	5050	3	3	0	0	0	0	copy fasta	SPECC1	chr17	20004359	20324026
SPECC1_chr17_20004359_20324026	0/0	t0013	5066	3	0	2	1	0	0	copy fasta	SPECC1	chr17	20004359	20324026
SPECC1_chr17_20004359_20324026	0/0	t0014	5070	3	0	2	0	0	1	copy fasta	SPECC1	chr17	20004359	20324026
SPECC1_chr17_20004359_20324026	0/0	t0015	5065	3	0	0	2	0	1	copy fasta	SPECC1	chr17	20004359	20324026
SPECC1_chr17_20004359_20324026	0/0	t0016	5057	3	0	1	1	1	0	copy fasta	SPECC1	chr17	20004359	20324026
SPECC1_chr17_20004359_20324026	0/0	t0017	5054	2	2	0	0	0	0	copy fasta	SPECC1	chr17	20004359	20324026
SPECC1_chr17_20004359_20324026	0/0	t0018	5057	2	2	0	0	0	0	copy fasta	SPECC1	chr17	20004359	20324026
SPECC1_chr17_20004359_20324026	0/0	t0019	5055	2	2	0	0	0	0	copy fasta	SPECC1	chr17	20004359	20324026
SPECC1_chr17_20004359_20324026	0/0	t0020	5050	2	0	1	0	0	1	copy fasta	SPECC1	chr17	20004359	20324026
SPECC1_chr17_20004359_20324026	0/0	t0021	5057	2	2	0	0	0	0	copy fasta	SPECC1	chr17	20004359	20324026
SPECC1_chr17_20004359_20324026	0/0	t0022	5064	2	2	0	0	0	0	copy fasta	SPECC1	chr17	20004359	20324026
SPECC1_chr17_20004359_20324026	0/0	t0023	5060	2	0	0	2	0	0	copy fasta	SPECC1	chr17	20004359	20324026
SPECC1_chr17_20004359_20324026	1/0	t0024	5049	2	0	1	0	0	0	copy fasta	SPECC1	chr17	20004359	20324026
SPECC1_chr17_20004359_20324026	0/0	t0025	5065	2	1	0	0	0	1	copy fasta	SPECC1	chr17	20004359	20324026
SPECC1_chr17_20004359_20324026	0/0	t0026	5068	2	2	0	0	0	0	copy fasta	SPECC1	chr17	20004359	20324026
SPECC1_chr17_20004359_20324026	0/0	t0027	5069	2	2	0	0	0	0	copy fasta	SPECC1	chr17	20004359	20324026
SPECC1_chr17_20004359_20324026	0/0	t0028	5065	2	2	0	0	0	0	copy fasta	SPECC1	chr17	20004359	20324026
SPECC1_chr17_20004359_20324026	0/0	t0029	5055	2	2	0	0	0	0	copy fasta	SPECC1	chr17	20004359	20324026
SPECC1_chr17_20004359_20324026	0/0	t0030	5059	2	2	0	0	0	0	copy fasta	SPECC1	chr17	20004359	20324026
SPECC1_chr17_20004359_20324026	0/0	t0031	5060	2	2	0	0	0	0	copy fasta	SPECC1	chr17	20004359	20324026
SPECC1_chr17_20004359_20324026	0/0	t0032	5057	2	2	0	0	0	0	copy fasta	SPECC1	chr17	20004359	20324026
SPECC1_chr17_20004359_20324026	0/0	t0033	5057	2	0	2	0	0	0	copy fasta	SPECC1	chr17	20004359	20324026
SPECC1_chr17_20004359_20324026	0/0	t0034	5056	2	0	1	1	0	0	copy fasta	SPECC1	chr17	20004359	20324026
SPECC1_chr17_20004359_20324026	0/0	t0035	5047	1	1	0	0	0	0	copy fasta	SPECC1	chr17	20004359	20324026
SPECC1_chr17_20004359_20324026	0/0	t0036	5047	1	1	0	0	0	0	copy fasta	SPECC1	chr17	20004359	20324026
SPECC1_chr17_20004359_20324026	0/0	t0037	5049	1	0	1	0	0	0	copy fasta	SPECC1	chr17	20004359	20324026
SPECC1_chr17_20004359_20324026	0/0	t0038	5057	1	0	0	1	0	0	copy fasta	SPECC1	chr17	20004359	20324026
SPECC1_chr17_20004359_20324026	0/0	t0039	5057	1	1	0	0	0	0	copy fasta	SPECC1	chr17	20004359	20324026
SPECC1_chr17_20004359_20324026	0/0	t0040	5058	1	1	0	0	0	0	copy fasta	SPECC1	chr17	20004359	20324026