JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	SAS	tseq	genename	chr	start	end
SPECC1_chr17_20004359_20324026	0/0	t0041	5064	1	0	0	0	1	copy fasta	SPECC1	chr17	20004359	20324026
SPECC1_chr17_20004359_20324026	0/0	t0042	5057	1	1	0	0	0	copy fasta	SPECC1	chr17	20004359	20324026
SPECC1_chr17_20004359_20324026	0/0	t0043	5056	1	0	0	1	0	copy fasta	SPECC1	chr17	20004359	20324026
SPECC1_chr17_20004359_20324026	0/0	t0044	5063	1	1	0	0	0	copy fasta	SPECC1	chr17	20004359	20324026
SPECC1_chr17_20004359_20324026	0/0	t0045	5065	1	1	0	0	0	copy fasta	SPECC1	chr17	20004359	20324026
SPECC1_chr17_20004359_20324026	0/0	t0046	5059	1	0	0	1	0	copy fasta	SPECC1	chr17	20004359	20324026
SPECC1_chr17_20004359_20324026	0/0	t0047	5063	1	1	0	0	0	copy fasta	SPECC1	chr17	20004359	20324026
SPECC1_chr17_20004359_20324026	0/0	t0048	5049	1	1	0	0	0	copy fasta	SPECC1	chr17	20004359	20324026
SPECC1_chr17_20004359_20324026	0/0	t0049	5056	1	1	0	0	0	copy fasta	SPECC1	chr17	20004359	20324026
SPECC1_chr17_20004359_20324026	0/0	t0050	5057	1	1	0	0	0	copy fasta	SPECC1	chr17	20004359	20324026
SPECC1_chr17_20004359_20324026	0/0	t0051	5058	1	1	0	0	0	copy fasta	SPECC1	chr17	20004359	20324026
SPECC1_chr17_20004359_20324026	0/0	t0052	5061	1	1	0	0	0	copy fasta	SPECC1	chr17	20004359	20324026
SPECC1_chr17_20004359_20324026	0/0	t0053	5065	1	1	0	0	0	copy fasta	SPECC1	chr17	20004359	20324026
SPECC1_chr17_20004359_20324026	0/0	t0054	5056	1	1	0	0	0	copy fasta	SPECC1	chr17	20004359	20324026
SPECC1_chr17_20004359_20324026	0/0	t0055	5058	1	1	0	0	0	copy fasta	SPECC1	chr17	20004359	20324026
SPECC1_chr17_20004359_20324026	0/0	t0056	5058	1	0	0	1	0	copy fasta	SPECC1	chr17	20004359	20324026
SPECC1_chr17_20004359_20324026	0/0	t0057	5050	1	0	0	1	0	copy fasta	SPECC1	chr17	20004359	20324026
SPECC1_chr17_20004359_20324026	0/0	t0058	5058	1	0	0	1	0	copy fasta	SPECC1	chr17	20004359	20324026
SPECC1_chr17_20004359_20324026	0/0	t0059	5061	1	0	0	1	0	copy fasta	SPECC1	chr17	20004359	20324026
SPECC1_chr17_20004359_20324026	0/0	t0060	5060	1	1	0	0	0	copy fasta	SPECC1	chr17	20004359	20324026
SPECC1_chr17_20004359_20324026	0/0	t0061	5060	1	1	0	0	0	copy fasta	SPECC1	chr17	20004359	20324026
SPECC1_chr17_20004359_20324026	0/0	t0062	5051	1	1	0	0	0	copy fasta	SPECC1	chr17	20004359	20324026
SPECC1_chr17_20004359_20324026	0/0	t0063	5058	1	0	1	0	0	copy fasta	SPECC1	chr17	20004359	20324026
SPECC1_chr17_20004359_20324026	0/0	t0064	5061	1	0	0	1	0	copy fasta	SPECC1	chr17	20004359	20324026
SPECC1_chr17_20004359_20324026	0/0	t0065	5062	1	0	0	1	0	copy fasta	SPECC1	chr17	20004359	20324026
SPECC1_chr17_20004359_20324026	0/0	t0066	5061	1	0	0	1	0	copy fasta	SPECC1	chr17	20004359	20324026
SPECC1_chr17_20004359_20324026	0/0	t0067	5060	1	0	0	1	0	copy fasta	SPECC1	chr17	20004359	20324026
SPECC1_chr17_20004359_20324026	0/0	t0068	5056	1	1	0	0	0	copy fasta	SPECC1	chr17	20004359	20324026
SPECC1_chr17_20004359_20324026	0/0	t0069	5056	1	0	0	0	1	copy fasta	SPECC1	chr17	20004359	20324026
SPECC1_chr17_20004359_20324026	0/0	t0070	5049	1	1	0	0	0	copy fasta	SPECC1	chr17	20004359	20324026
SPECC1_chr17_20004359_20324026	0/0	t0071	5057	1	1	0	0	0	copy fasta	SPECC1	chr17	20004359	20324026
SPECC1_chr17_20004359_20324026	0/0	t0072	5059	1	1	0	0	0	copy fasta	SPECC1	chr17	20004359	20324026
SPECC1_chr17_20004359_20324026	0/0	t0073	5062	1	0	0	1	0	copy fasta	SPECC1	chr17	20004359	20324026
SPECC1_chr17_20004359_20324026	0/0	t0074	5065	1	0	0	1	0	copy fasta	SPECC1	chr17	20004359	20324026
SPECC1_chr17_20004359_20324026	0/0	t0075	5057	1	1	0	0	0	copy fasta	SPECC1	chr17	20004359	20324026
SPECC1_chr17_20004359_20324026	0/0	t0076	5054	1	1	0	0	0	copy fasta	SPECC1	chr17	20004359	20324026
SPECC1_chr17_20004359_20324026	0/0	t0077	5062	1	1	0	0	0	copy fasta	SPECC1	chr17	20004359	20324026
SPECC1_chr17_20004359_20324026	0/0	t0078	5063	1	0	0	1	0	copy fasta	SPECC1	chr17	20004359	20324026
SPECC1_chr17_20004359_20324026	0/0	t0079	5064	1	0	0	1	0	copy fasta	SPECC1	chr17	20004359	20324026
SPECC1_chr17_20004359_20324026	0/0	t0080	5063	1	1	0	0	0	copy fasta	SPECC1	chr17	20004359	20324026
SPECC1_chr17_20004359_20324026	0/0	t0081	5063	1	0	0	1	0	copy fasta	SPECC1	chr17	20004359	20324026
SPECC1_chr17_20004359_20324026	0/0	t0082	5064	1	0	0	1	0	copy fasta	SPECC1	chr17	20004359	20324026
SPECC1_chr17_20004359_20324026	0/0	t0083	5065	1	0	0	0	1	copy fasta	SPECC1	chr17	20004359	20324026
SPECC1_chr17_20004359_20324026	0/0	t0084	5065	1	0	0	1	0	copy fasta	SPECC1	chr17	20004359	20324026
SPECC1_chr17_20004359_20324026	0/0	t0085	5064	1	1	0	0	0	copy fasta	SPECC1	chr17	20004359	20324026
SPECC1_chr17_20004359_20324026	0/0	t0086	5066	1	1	0	0	0	copy fasta	SPECC1	chr17	20004359	20324026
SPECC1_chr17_20004359_20324026	0/0	t0087	5065	1	0	1	0	0	copy fasta	SPECC1	chr17	20004359	20324026
SPECC1_chr17_20004359_20324026	0/0	t0088	5061	1	1	0	0	0	copy fasta	SPECC1	chr17	20004359	20324026
SPECC1_chr17_20004359_20324026	0/0	t0089	5061	1	1	0	0	0	copy fasta	SPECC1	chr17	20004359	20324026
SPECC1_chr17_20004359_20324026	0/0	t0090	5064	1	0	1	0	0	copy fasta	SPECC1	chr17	20004359	20324026