Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
BIN3_chr8_22615418_22674121	0/0	t0015	1076	2	1	0	1	0	0	copy fasta	BIN3	chr8	22615418	22674121
BIN3_chr8_22615418_22674121	0/0	t0016	1078	2	2	0	0	0	0	copy fasta	BIN3	chr8	22615418	22674121
BIN3_chr8_22615418_22674121	0/0	t0017	1073	2	2	0	0	0	0	copy fasta	BIN3	chr8	22615418	22674121
BIN3_chr8_22615418_22674121	0/0	t0018	1075	1	1	0	0	0	0	copy fasta	BIN3	chr8	22615418	22674121
BIN3_chr8_22615418_22674121	0/0	t0019	1073	1	1	0	0	0	0	copy fasta	BIN3	chr8	22615418	22674121
BIN3_chr8_22615418_22674121	0/0	t0020	1072	1	0	0	0	1	0	copy fasta	BIN3	chr8	22615418	22674121
BIN3_chr8_22615418_22674121	0/0	t0021	1075	1	1	0	0	0	0	copy fasta	BIN3	chr8	22615418	22674121
BIN3_chr8_22615418_22674121	0/0	t0022	1073	1	1	0	0	0	0	copy fasta	BIN3	chr8	22615418	22674121
BIN3_chr8_22615418_22674121	0/0	t0023	1072	1	0	0	0	0	1	copy fasta	BIN3	chr8	22615418	22674121
BIN3_chr8_22615418_22674121	0/0	t0024	1075	1	1	0	0	0	0	copy fasta	BIN3	chr8	22615418	22674121
BIN3_chr8_22615418_22674121	0/0	t0025	1072	1	1	0	0	0	0	copy fasta	BIN3	chr8	22615418	22674121
BIN3_chr8_22615418_22674121	0/0	t0026	1078	1	1	0	0	0	0	copy fasta	BIN3	chr8	22615418	22674121
BIN3_chr8_22615418_22674121	0/0	t0027	1077	1	1	0	0	0	0	copy fasta	BIN3	chr8	22615418	22674121
BIN3_chr8_22615418_22674121	0/0	t0028	1078	1	0	0	0	0	1	copy fasta	BIN3	chr8	22615418	22674121
BIN3_chr8_22615418_22674121	0/0	t0029	1075	1	0	1	0	0	0	copy fasta	BIN3	chr8	22615418	22674121
BIN3_chr8_22615418_22674121	0/0	t0030	1075	1	0	0	0	1	0	copy fasta	BIN3	chr8	22615418	22674121
BIN3_chr8_22615418_22674121	0/0	t0031	1075	1	0	0	0	1	0	copy fasta	BIN3	chr8	22615418	22674121
BIN3_chr8_22615418_22674121	0/0	t0032	1075	1	1	0	0	0	0	copy fasta	BIN3	chr8	22615418	22674121
BIN3_chr8_22615418_22674121	0/0	t0033	1078	1	0	1	0	0	0	copy fasta	BIN3	chr8	22615418	22674121
BIN3_chr8_22615418_22674121	0/0	t0034	1075	1	0	1	0	0	0	copy fasta	BIN3	chr8	22615418	22674121
BIN3_chr8_22615418_22674121	0/0	t0035	1079	1	0	0	0	0	1	copy fasta	BIN3	chr8	22615418	22674121
BIN3_chr8_22615418_22674121	0/0	t0036	1075	1	0	0	1	0	0	copy fasta	BIN3	chr8	22615418	22674121
BIN3_chr8_22615418_22674121	0/0	t0037	1078	1	0	0	0	1	0	copy fasta	BIN3	chr8	22615418	22674121
BIRC2_chr11_102342214_102383670	1/1	t0001	1908	312	72	65	124	14	35	copy fasta	BIRC2	chr11	102342214	102383670
BIRC2_chr11_102342214_102383670	0/0	t0002	1909	14	10	2	0	0	2	copy fasta	BIRC2	chr11	102342214	102383670
BIRC2_chr11_102342214_102383670	0/0	t0003	1908	5	5	0	0	0	0	copy fasta	BIRC2	chr11	102342214	102383670
BIRC2_chr11_102342214_102383670	0/0	t0004	1893	4	0	0	4	0	0	copy fasta	BIRC2	chr11	102342214	102383670
BIRC2_chr11_102342214_102383670	0/0	t0005	1908	2	0	2	0	0	0	copy fasta	BIRC2	chr11	102342214	102383670
BIRC2_chr11_102342214_102383670	0/0	t0006	1908	2	0	2	0	0	0	copy fasta	BIRC2	chr11	102342214	102383670
BIRC2_chr11_102342214_102383670	0/0	t0007	1908	1	0	0	0	0	1	copy fasta	BIRC2	chr11	102342214	102383670
BIRC2_chr11_102342214_102383670	0/0	t0008	1909	1	0	1	0	0	0	copy fasta	BIRC2	chr11	102342214	102383670
BIRC2_chr11_102342214_102383670	0/0	t0009	1908	1	1	0	0	0	0	copy fasta	BIRC2	chr11	102342214	102383670
BIRC2_chr11_102342214_102383670	0/0	t0010	1908	1	0	0	1	0	0	copy fasta	BIRC2	chr11	102342214	102383670
BIRC2_chr11_102342214_102383670	0/0	t0011	1908	1	0	0	1	0	0	copy fasta	BIRC2	chr11	102342214	102383670
BIRC3_chr11_102312484_102344403	0/1	t0001	5062	195	36	43	85	7	23	copy fasta	BIRC3	chr11	102312484	102344403
BIRC3_chr11_102312484_102344403	0/0	t0002	5063	43	0	1	42	0	0	copy fasta	BIRC3	chr11	102312484	102344403
BIRC3_chr11_102312484_102344403	1/0	t0003	5063	41	4	15	12	1	8	copy fasta	BIRC3	chr11	102312484	102344403
BIRC3_chr11_102312484_102344403	0/0	t0004	5063	19	2	4	11	0	2	copy fasta	BIRC3	chr11	102312484	102344403
BIRC3_chr11_102312484_102344403	0/0	t0005	5063	8	0	5	1	0	2	copy fasta	BIRC3	chr11	102312484	102344403
BIRC3_chr11_102312484_102344403	0/0	t0006	5063	7	4	3	0	0	0	copy fasta	BIRC3	chr11	102312484	102344403
BIRC3_chr11_102312484_102344403	0/0	t0007	5061	7	2	0	3	2	0	copy fasta	BIRC3	chr11	102312484	102344403
BIRC3_chr11_102312484_102344403	0/0	t0008	5060	5	5	0	0	0	0	copy fasta	BIRC3	chr11	102312484	102344403
BIRC3_chr11_102312484_102344403	0/0	t0009	5059	5	4	1	0	0	0	copy fasta	BIRC3	chr11	102312484	102344403
BIRC3_chr11_102312484_102344403	0/0	t0010	5062	5	0	2	0	1	2	copy fasta	BIRC3	chr11	102312484	102344403
BIRC3_chr11_102312484_102344403	0/0	t0011	5062	4	4	0	0	0	0	copy fasta	BIRC3	chr11	102312484	102344403
BIRC3_chr11_102312484_102344403	0/0	t0012	5059	3	3	0	0	0	0	copy fasta	BIRC3	chr11	102312484	102344403
BIRC3_chr11_102312484_102344403	0/0	t0013	5064	3	0	0	3	0	0	copy fasta	BIRC3	chr11	102312484	102344403
BIRC3_chr11_102312484_102344403	0/0	t0014	5063	3	2	1	0	0	0	copy fasta	BIRC3	chr11	102312484	102344403
BIRC3_chr11_102312484_102344403	0/0	t0015	5062	3	0	0	3	0	0	copy fasta	BIRC3	chr11	102312484	102344403
BIRC3_chr11_102312484_102344403	0/0	t0016	5060	2	2	0	0	0	0	copy fasta	BIRC3	chr11	102312484	102344403