JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SPEM1_chr17_7415324_7426632	0/0	t0003	89	1	0	0	1	0	0	copy fasta	SPEM1	chr17	7415324	7426632
SPEM1_chr17_7415324_7426632	0/0	t0004	89	1	1	0	0	0	0	copy fasta	SPEM1	chr17	7415324	7426632
SPEM2_chr17_7420616_7432568	1/1	t0001	145	362	88	80	130	16	46	copy fasta	SPEM2	chr17	7420616	7432568
SPEM2_chr17_7420616_7432568	0/0	t0002	145	2	0	0	2	0	0	copy fasta	SPEM2	chr17	7420616	7432568
SPEM3_chr17_7423857_7437820	1/1	t0001	105	354	92	78	130	16	36	copy fasta	SPEM3	chr17	7423857	7437820
SPEN_chr1_15842707_15945456	1/1	t0001	1391	297	77	63	109	13	33	copy fasta	SPEN	chr1	15842707	15945456
SPEN_chr1_15842707_15945456	0/0	t0002	1391	2	2	0	0	0	0	copy fasta	SPEN	chr1	15842707	15945456
SPEN_chr1_15842707_15945456	0/0	t0003	1391	1	0	0	0	1	0	copy fasta	SPEN	chr1	15842707	15945456
SPEN_chr1_15842707_15945456	0/0	t0004	1391	1	0	0	1	0	0	copy fasta	SPEN	chr1	15842707	15945456
SPEN_chr1_15842707_15945456	0/0	t0005	1391	1	1	0	0	0	0	copy fasta	SPEN	chr1	15842707	15945456
SPEN_chr1_15842707_15945456	0/0	t0006	1391	1	0	1	0	0	0	copy fasta	SPEN	chr1	15842707	15945456
SPEN_chr1_15842707_15945456	0/0	t0007	1391	1	0	0	0	0	1	copy fasta	SPEN	chr1	15842707	15945456
SPESP1_chr15_68925525_68951811	1/1	t0001	354	394	93	54	189	14	42	copy fasta	SPESP1	chr15	68925525	68951811
SPESP1_chr15_68925525_68951811	0/0	t0002	354	5	0	0	5	0	0	copy fasta	SPESP1	chr15	68925525	68951811
SPESP1_chr15_68925525_68951811	0/0	t0003	354	1	0	0	1	0	0	copy fasta	SPESP1	chr15	68925525	68951811
SPESP1_chr15_68925525_68951811	0/0	t0004	354	1	1	0	0	0	0	copy fasta	SPESP1	chr15	68925525	68951811
SPESP1_chr15_68925525_68951811	0/0	t0005	354	1	0	0	1	0	0	copy fasta	SPESP1	chr15	68925525	68951811
SPG11_chr15_44557696_44668662	1/1	t0001	441	183	65	20	72	6	18	copy fasta	SPG11	chr15	44557696	44668662
SPG11_chr15_44557696_44668662	0/0	t0002	441	6	6	0	0	0	0	copy fasta	SPG11	chr15	44557696	44668662
SPG11_chr15_44557696_44668662	0/0	t0003	441	1	1	0	0	0	0	copy fasta	SPG11	chr15	44557696	44668662
SPG21_chr15_64958022_64994914	0/0	t0001	873	202	31	29	120	11	11	copy fasta	SPG21	chr15	64958022	64994914
SPG21_chr15_64958022_64994914	0/1	t0002	873	67	15	14	22	4	11	copy fasta	SPG21	chr15	64958022	64994914
SPG21_chr15_64958022_64994914	0/0	t0003	873	39	24	6	2	1	6	copy fasta	SPG21	chr15	64958022	64994914
SPG21_chr15_64958022_64994914	0/0	t0004	895	16	16	0	0	0	0	copy fasta	SPG21	chr15	64958022	64994914
SPG21_chr15_64958022_64994914	0/0	t0005	873	11	1	3	5	0	2	copy fasta	SPG21	chr15	64958022	64994914
SPG21_chr15_64958022_64994914	0/0	t0006	873	5	0	4	1	0	0	copy fasta	SPG21	chr15	64958022	64994914
SPG21_chr15_64958022_64994914	1/0	t0007	873	4	3	0	0	0	0	copy fasta	SPG21	chr15	64958022	64994914
SPG21_chr15_64958022_64994914	0/0	t0008	873	4	3	0	1	0	0	copy fasta	SPG21	chr15	64958022	64994914
SPG21_chr15_64958022_64994914	0/0	t0009	873	1	0	1	0	0	0	copy fasta	SPG21	chr15	64958022	64994914
SPG21_chr15_64958022_64994914	0/0	t0010	873	1	1	0	0	0	0	copy fasta	SPG21	chr15	64958022	64994914
SPG21_chr15_64958022_64994914	0/0	t0011	873	1	0	1	0	0	0	copy fasta	SPG21	chr15	64958022	64994914
SPG21_chr15_64958022_64994914	0/0	t0012	873	1	0	0	1	0	0	copy fasta	SPG21	chr15	64958022	64994914
SPG7_chr16_89503403_89562766	1/0	t0001	689	287	60	69	115	13	29	copy fasta	SPG7	chr16	89503403	89562766
SPG7_chr16_89503403_89562766	0/1	t0002	693	54	17	5	16	3	12	copy fasta	SPG7	chr16	89503403	89562766
SPG7_chr16_89503403_89562766	0/0	t0003	693	6	6	0	0	0	0	copy fasta	SPG7	chr16	89503403	89562766
SPG7_chr16_89503403_89562766	0/0	t0004	689	4	4	0	0	0	0	copy fasta	SPG7	chr16	89503403	89562766
SPG7_chr16_89503403_89562766	0/0	t0005	693	2	2	0	0	0	0	copy fasta	SPG7	chr16	89503403	89562766
SPG7_chr16_89503403_89562766	0/0	t0006	693	1	0	0	1	0	0	copy fasta	SPG7	chr16	89503403	89562766
SPG7_chr16_89503403_89562766	0/0	t0007	693	1	0	0	0	0	1	copy fasta	SPG7	chr16	89503403	89562766
SPG7_chr16_89503403_89562766	0/0	t0008	689	1	1	0	0	0	0	copy fasta	SPG7	chr16	89503403	89562766
SPG7_chr16_89503403_89562766	0/0	t0009	693	1	1	0	0	0	0	copy fasta	SPG7	chr16	89503403	89562766
SPG7_chr16_89503403_89562766	0/0	t0010	693	1	1	0	0	0	0	copy fasta	SPG7	chr16	89503403	89562766
SPHK1_chr17_76379609_76392855	0/0	t0001	662	226	51	22	127	6	20	copy fasta	SPHK1	chr17	76379609	76392855
SPHK1_chr17_76379609_76392855	0/1	t0002	662	91	5	26	37	8	14	copy fasta	SPHK1	chr17	76379609	76392855
SPHK1_chr17_76379609_76392855	0/0	t0003	662	36	6	8	16	0	6	copy fasta	SPHK1	chr17	76379609	76392855
SPHK1_chr17_76379609_76392855	1/0	t0004	662	28	17	3	1	1	5	copy fasta	SPHK1	chr17	76379609	76392855
SPHK1_chr17_76379609_76392855	0/0	t0005	662	11	9	2	0	0	0	copy fasta	SPHK1	chr17	76379609	76392855
SPHK1_chr17_76379609_76392855	0/0	t0006	662	9	5	1	1	1	1	copy fasta	SPHK1	chr17	76379609	76392855
SPHK1_chr17_76379609_76392855	0/0	t0007	660	3	0	0	3	0	0	copy fasta	SPHK1	chr17	76379609	76392855
SPHK1_chr17_76379609_76392855	0/0	t0008	662	2	0	2	0	0	0	copy fasta	SPHK1	chr17	76379609	76392855