JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SPHK1_chr17_76379609_76392855	0/0	t0009	662	2	1	1	0	0	0	copy fasta	SPHK1	chr17	76379609	76392855
SPHK1_chr17_76379609_76392855	0/0	t0010	662	1	1	0	0	0	0	copy fasta	SPHK1	chr17	76379609	76392855
SPHK1_chr17_76379609_76392855	0/0	t0011	662	1	0	0	1	0	0	copy fasta	SPHK1	chr17	76379609	76392855
SPHK1_chr17_76379609_76392855	0/0	t0012	662	1	0	1	0	0	0	copy fasta	SPHK1	chr17	76379609	76392855
SPHK1_chr17_76379609_76392855	0/0	t0013	662	1	1	0	0	0	0	copy fasta	SPHK1	chr17	76379609	76392855
SPHK2_chr19_48614506_48635405	1/1	t0001	784	395	93	79	169	14	38	copy fasta	SPHK2	chr19	48614506	48635405
SPHK2_chr19_48614506_48635405	0/0	t0002	784	1	1	0	0	0	0	copy fasta	SPHK2	chr19	48614506	48635405
SPHK2_chr19_48614506_48635405	0/0	t0003	784	1	0	1	0	0	0	copy fasta	SPHK2	chr19	48614506	48635405
SPHK2_chr19_48614506_48635405	0/0	t0004	784	1	0	0	1	0	0	copy fasta	SPHK2	chr19	48614506	48635405
SPHKAP_chr2_227974955_228186687	1/0	t0001	1852	144	41	32	47	5	18	copy fasta	SPHKAP	chr2	227974955	228186687
SPHKAP_chr2_227974955_228186687	0/1	t0002	1849	74	17	9	41	2	4	copy fasta	SPHKAP	chr2	227974955	228186687
SPHKAP_chr2_227974955_228186687	0/0	t0003	1848	57	6	18	25	3	5	copy fasta	SPHKAP	chr2	227974955	228186687
SPHKAP_chr2_227974955_228186687	0/0	t0004	1852	9	0	0	9	0	0	copy fasta	SPHKAP	chr2	227974955	228186687
SPHKAP_chr2_227974955_228186687	0/0	t0005	1852	8	8	0	0	0	0	copy fasta	SPHKAP	chr2	227974955	228186687
SPHKAP_chr2_227974955_228186687	0/0	t0006	1852	8	8	0	0	0	0	copy fasta	SPHKAP	chr2	227974955	228186687
SPHKAP_chr2_227974955_228186687	0/0	t0007	1852	6	2	2	0	0	2	copy fasta	SPHKAP	chr2	227974955	228186687
SPHKAP_chr2_227974955_228186687	0/0	t0008	1852	6	5	0	0	0	1	copy fasta	SPHKAP	chr2	227974955	228186687
SPHKAP_chr2_227974955_228186687	0/0	t0009	1852	2	2	0	0	0	0	copy fasta	SPHKAP	chr2	227974955	228186687
SPHKAP_chr2_227974955_228186687	0/0	t0010	1852	2	0	2	0	0	0	copy fasta	SPHKAP	chr2	227974955	228186687
SPHKAP_chr2_227974955_228186687	0/0	t0011	1849	1	1	0	0	0	0	copy fasta	SPHKAP	chr2	227974955	228186687
SPHKAP_chr2_227974955_228186687	0/0	t0012	1849	1	1	0	0	0	0	copy fasta	SPHKAP	chr2	227974955	228186687
SPHKAP_chr2_227974955_228186687	0/0	t0013	1852	1	0	1	0	0	0	copy fasta	SPHKAP	chr2	227974955	228186687
SPHKAP_chr2_227974955_228186687	0/0	t0014	1852	1	0	0	0	0	1	copy fasta	SPHKAP	chr2	227974955	228186687
SPHKAP_chr2_227974955_228186687	0/0	t0015	1852	1	1	0	0	0	0	copy fasta	SPHKAP	chr2	227974955	228186687
SPHKAP_chr2_227974955_228186687	0/0	t0016	2045	1	0	0	0	0	1	copy fasta	SPHKAP	chr2	227974955	228186687
SPI1_chr11_47349860_47383547	0/1	t0001	562	262	64	47	110	11	29	copy fasta	SPI1	chr11	47349860	47383547
SPI1_chr11_47349860_47383547	1/0	t0002	562	118	26	23	54	1	13	copy fasta	SPI1	chr11	47349860	47383547
SPI1_chr11_47349860_47383547	0/0	t0003	562	5	0	2	0	2	1	copy fasta	SPI1	chr11	47349860	47383547
SPI1_chr11_47349860_47383547	0/0	t0004	562	3	0	2	0	0	1	copy fasta	SPI1	chr11	47349860	47383547
SPI1_chr11_47349860_47383547	0/0	t0005	562	1	0	0	1	0	0	copy fasta	SPI1	chr11	47349860	47383547
SPI1_chr11_47349860_47383547	0/0	t0006	562	1	0	0	1	0	0	copy fasta	SPI1	chr11	47349860	47383547
SPIB_chr19_50413938_50436314	0/1	t0001	3005	164	26	44	63	10	20	copy fasta	SPIB	chr19	50413938	50436314
SPIB_chr19_50413938_50436314	0/0	t0002	3005	84	0	16	52	4	12	copy fasta	SPIB	chr19	50413938	50436314
SPIB_chr19_50413938_50436314	0/0	t0003	3005	38	4	8	17	2	7	copy fasta	SPIB	chr19	50413938	50436314
SPIB_chr19_50413938_50436314	0/0	t0004	3005	24	23	1	0	0	0	copy fasta	SPIB	chr19	50413938	50436314
SPIB_chr19_50413938_50436314	0/0	t0005	3005	13	5	3	1	1	3	copy fasta	SPIB	chr19	50413938	50436314
SPIB_chr19_50413938_50436314	0/0	t0006	3004	9	9	0	0	0	0	copy fasta	SPIB	chr19	50413938	50436314
SPIB_chr19_50413938_50436314	0/0	t0007	3006	6	0	3	1	0	2	copy fasta	SPIB	chr19	50413938	50436314
SPIB_chr19_50413938_50436314	0/0	t0008	3005	5	0	0	3	0	2	copy fasta	SPIB	chr19	50413938	50436314
SPIB_chr19_50413938_50436314	0/0	t0009	3005	4	3	1	0	0	0	copy fasta	SPIB	chr19	50413938	50436314
SPIB_chr19_50413938_50436314	0/0	t0010	3006	4	0	3	0	1	0	copy fasta	SPIB	chr19	50413938	50436314
SPIB_chr19_50413938_50436314	0/0	t0011	3005	4	4	0	0	0	0	copy fasta	SPIB	chr19	50413938	50436314
SPIB_chr19_50413938_50436314	0/0	t0012	3005	3	3	0	0	0	0	copy fasta	SPIB	chr19	50413938	50436314
SPIB_chr19_50413938_50436314	0/0	t0013	3005	3	2	1	0	0	0	copy fasta	SPIB	chr19	50413938	50436314
SPIB_chr19_50413938_50436314	0/0	t0014	3005	2	2	0	0	0	0	copy fasta	SPIB	chr19	50413938	50436314
SPIB_chr19_50413938_50436314	0/0	t0015	3005	2	2	0	0	0	0	copy fasta	SPIB	chr19	50413938	50436314
SPIB_chr19_50413938_50436314	0/0	t0016	3005	2	2	0	0	0	0	copy fasta	SPIB	chr19	50413938	50436314
SPIB_chr19_50413938_50436314	0/0	t0017	3005	2	0	0	2	0	0	copy fasta	SPIB	chr19	50413938	50436314
SPIB_chr19_50413938_50436314	0/0	t0018	3005	2	0	0	0	0	2	copy fasta	SPIB	chr19	50413938	50436314
SPIB_chr19_50413938_50436314	0/0	t0019	3005	2	2	0	0	0	0	copy fasta	SPIB	chr19	50413938	50436314