JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SPIB_chr19_50413938_50436314	0/0	t0020	3005	1	0	1	0	0	0	copy fasta	SPIB	chr19	50413938	50436314
SPIB_chr19_50413938_50436314	0/0	t0021	3005	1	1	0	0	0	0	copy fasta	SPIB	chr19	50413938	50436314
SPIB_chr19_50413938_50436314	0/0	t0022	3005	1	1	0	0	0	0	copy fasta	SPIB	chr19	50413938	50436314
SPIB_chr19_50413938_50436314	0/0	t0023	3005	1	0	1	0	0	0	copy fasta	SPIB	chr19	50413938	50436314
SPIB_chr19_50413938_50436314	0/0	t0024	3005	1	1	0	0	0	0	copy fasta	SPIB	chr19	50413938	50436314
SPIB_chr19_50413938_50436314	0/0	t0025	3004	1	0	0	1	0	0	copy fasta	SPIB	chr19	50413938	50436314
SPIB_chr19_50413938_50436314	0/0	t0026	3005	1	1	0	0	0	0	copy fasta	SPIB	chr19	50413938	50436314
SPIB_chr19_50413938_50436314	0/0	t0027	3005	1	0	0	0	0	1	copy fasta	SPIB	chr19	50413938	50436314
SPIB_chr19_50413938_50436314	0/0	t0028	3006	1	0	0	1	0	0	copy fasta	SPIB	chr19	50413938	50436314
SPIB_chr19_50413938_50436314	0/0	t0029	3005	1	0	0	0	0	1	copy fasta	SPIB	chr19	50413938	50436314
SPIB_chr19_50413938_50436314	0/0	t0030	3005	1	1	0	0	0	0	copy fasta	SPIB	chr19	50413938	50436314
SPIB_chr19_50413938_50436314	0/0	t0031	3005	1	0	0	1	0	0	copy fasta	SPIB	chr19	50413938	50436314
SPIB_chr19_50413938_50436314	0/0	t0032	3004	1	1	0	0	0	0	copy fasta	SPIB	chr19	50413938	50436314
SPIB_chr19_50413938_50436314	0/0	t0033	3005	1	1	0	0	0	0	copy fasta	SPIB	chr19	50413938	50436314
SPIB_chr19_50413938_50436314	1/0	t0034	3004	1	0	0	0	0	0	copy fasta	SPIB	chr19	50413938	50436314
SPICE1_chr3_113437718_113520156	1/0	t0001	2850	102	14	24	36	6	21	copy fasta	SPICE1	chr3	113437718	113520156
SPICE1_chr3_113437718_113520156	0/0	t0002	2850	76	1	16	52	1	6	copy fasta	SPICE1	chr3	113437718	113520156
SPICE1_chr3_113437718_113520156	0/0	t0003	2849	58	13	9	28	4	4	copy fasta	SPICE1	chr3	113437718	113520156
SPICE1_chr3_113437718_113520156	0/1	t0004	2849	36	19	0	15	0	1	copy fasta	SPICE1	chr3	113437718	113520156
SPICE1_chr3_113437718_113520156	0/0	t0005	2852	15	1	0	10	1	3	copy fasta	SPICE1	chr3	113437718	113520156
SPICE1_chr3_113437718_113520156	0/0	t0006	2849	13	12	1	0	0	0	copy fasta	SPICE1	chr3	113437718	113520156
SPICE1_chr3_113437718_113520156	0/0	t0007	2849	11	10	1	0	0	0	copy fasta	SPICE1	chr3	113437718	113520156
SPICE1_chr3_113437718_113520156	0/0	t0008	2850	10	0	0	10	0	0	copy fasta	SPICE1	chr3	113437718	113520156
SPICE1_chr3_113437718_113520156	0/0	t0009	2852	7	0	0	7	0	0	copy fasta	SPICE1	chr3	113437718	113520156
SPICE1_chr3_113437718_113520156	0/0	t0010	2846	4	4	0	0	0	0	copy fasta	SPICE1	chr3	113437718	113520156
SPICE1_chr3_113437718_113520156	0/0	t0011	2851	4	3	1	0	0	0	copy fasta	SPICE1	chr3	113437718	113520156
SPICE1_chr3_113437718_113520156	0/0	t0012	2852	3	0	0	3	0	0	copy fasta	SPICE1	chr3	113437718	113520156
SPICE1_chr3_113437718_113520156	0/0	t0013	2850	3	2	1	0	0	0	copy fasta	SPICE1	chr3	113437718	113520156
SPICE1_chr3_113437718_113520156	0/0	t0014	2850	2	0	2	0	0	0	copy fasta	SPICE1	chr3	113437718	113520156
SPICE1_chr3_113437718_113520156	0/0	t0015	2850	2	0	1	0	0	1	copy fasta	SPICE1	chr3	113437718	113520156
SPICE1_chr3_113437718_113520156	0/0	t0016	2851	2	1	1	0	0	0	copy fasta	SPICE1	chr3	113437718	113520156
SPICE1_chr3_113437718_113520156	0/0	t0017	2852	2	2	0	0	0	0	copy fasta	SPICE1	chr3	113437718	113520156
SPICE1_chr3_113437718_113520156	0/0	t0018	2849	2	2	0	0	0	0	copy fasta	SPICE1	chr3	113437718	113520156
SPICE1_chr3_113437718_113520156	0/0	t0019	2849	1	1	0	0	0	0	copy fasta	SPICE1	chr3	113437718	113520156
SPICE1_chr3_113437718_113520156	0/0	t0020	2851	1	1	0	0	0	0	copy fasta	SPICE1	chr3	113437718	113520156
SPICE1_chr3_113437718_113520156	0/0	t0021	2852	1	1	0	0	0	0	copy fasta	SPICE1	chr3	113437718	113520156
SPICE1_chr3_113437718_113520156	0/0	t0022	2849	1	1	0	0	0	0	copy fasta	SPICE1	chr3	113437718	113520156
SPICE1_chr3_113437718_113520156	0/0	t0023	2850	1	0	0	1	0	0	copy fasta	SPICE1	chr3	113437718	113520156
SPICE1_chr3_113437718_113520156	0/0	t0024	2849	1	1	0	0	0	0	copy fasta	SPICE1	chr3	113437718	113520156
SPICE1_chr3_113437718_113520156	0/0	t0025	2849	1	1	0	0	0	0	copy fasta	SPICE1	chr3	113437718	113520156
SPICE1_chr3_113437718_113520156	0/0	t0026	2849	1	1	0	0	0	0	copy fasta	SPICE1	chr3	113437718	113520156
SPICE1_chr3_113437718_113520156	0/0	t0027	2849	1	1	0	0	0	0	copy fasta	SPICE1	chr3	113437718	113520156
SPICE1_chr3_113437718_113520156	0/0	t0028	2849	1	0	1	0	0	0	copy fasta	SPICE1	chr3	113437718	113520156
SPICE1_chr3_113437718_113520156	0/0	t0029	2850	1	0	0	0	0	1	copy fasta	SPICE1	chr3	113437718	113520156
SPICE1_chr3_113437718_113520156	0/0	t0030	2850	1	0	0	0	0	1	copy fasta	SPICE1	chr3	113437718	113520156
SPIC_chr12_101470336_101491997	1/1	t0001	471	393	92	72	172	18	37	copy fasta	SPIC	chr12	101470336	101491997
SPIC_chr12_101470336_101491997	0/0	t0002	471	2	2	0	0	0	0	copy fasta	SPIC	chr12	101470336	101491997
SPIC_chr12_101470336_101491997	0/0	t0003	471	1	1	0	0	0	0	copy fasta	SPIC	chr12	101470336	101491997
SPIC_chr12_101470336_101491997	0/0	t0004	471	1	0	0	0	0	1	copy fasta	SPIC	chr12	101470336	101491997
SPIC_chr12_101470336_101491997	0/0	t0005	471	1	1	0	0	0	0	copy fasta	SPIC	chr12	101470336	101491997