JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SPIDR_chr8_47255938_47741306	1/1	t0001	878	116	26	25	39	3	21	copy fasta	SPIDR	chr8	47255938	47741306
SPIDR_chr8_47255938_47741306	0/0	t0002	878	91	39	13	25	1	13	copy fasta	SPIDR	chr8	47255938	47741306
SPIDR_chr8_47255938_47741306	0/0	t0003	878	4	2	0	0	0	2	copy fasta	SPIDR	chr8	47255938	47741306
SPIDR_chr8_47255938_47741306	0/0	t0004	878	3	3	0	0	0	0	copy fasta	SPIDR	chr8	47255938	47741306
SPIDR_chr8_47255938_47741306	0/0	t0005	878	1	1	0	0	0	0	copy fasta	SPIDR	chr8	47255938	47741306
SPIDR_chr8_47255938_47741306	0/0	t0006	878	1	1	0	0	0	0	copy fasta	SPIDR	chr8	47255938	47741306
SPIN1_chr9_88383444_88483694	1/1	t0001	3671	63	12	14	22	5	8	copy fasta	SPIN1	chr9	88383444	88483694
SPIN1_chr9_88383444_88483694	0/0	t0002	3670	51	40	3	6	0	2	copy fasta	SPIN1	chr9	88383444	88483694
SPIN1_chr9_88383444_88483694	0/0	t0003	3670	19	2	3	9	1	4	copy fasta	SPIN1	chr9	88383444	88483694
SPIN1_chr9_88383444_88483694	0/0	t0004	3671	10	9	1	0	0	0	copy fasta	SPIN1	chr9	88383444	88483694
SPIN1_chr9_88383444_88483694	0/0	t0005	3671	6	0	2	1	3	0	copy fasta	SPIN1	chr9	88383444	88483694
SPIN1_chr9_88383444_88483694	0/0	t0006	3671	6	5	1	0	0	0	copy fasta	SPIN1	chr9	88383444	88483694
SPIN1_chr9_88383444_88483694	0/0	t0007	3671	4	1	2	0	0	1	copy fasta	SPIN1	chr9	88383444	88483694
SPIN1_chr9_88383444_88483694	0/0	t0008	3670	4	4	0	0	0	0	copy fasta	SPIN1	chr9	88383444	88483694
SPIN1_chr9_88383444_88483694	0/0	t0009	3671	3	0	0	0	0	3	copy fasta	SPIN1	chr9	88383444	88483694
SPIN1_chr9_88383444_88483694	0/0	t0010	3671	2	2	0	0	0	0	copy fasta	SPIN1	chr9	88383444	88483694
SPIN1_chr9_88383444_88483694	0/0	t0011	3670	2	2	0	0	0	0	copy fasta	SPIN1	chr9	88383444	88483694
SPIN1_chr9_88383444_88483694	0/0	t0012	3670	1	1	0	0	0	0	copy fasta	SPIN1	chr9	88383444	88483694
SPIN1_chr9_88383444_88483694	0/0	t0013	3671	1	1	0	0	0	0	copy fasta	SPIN1	chr9	88383444	88483694
SPIN1_chr9_88383444_88483694	0/0	t0014	3671	1	1	0	0	0	0	copy fasta	SPIN1	chr9	88383444	88483694
SPIN1_chr9_88383444_88483694	0/0	t0015	3671	1	1	0	0	0	0	copy fasta	SPIN1	chr9	88383444	88483694
SPIN1_chr9_88383444_88483694	0/0	t0016	3670	1	1	0	0	0	0	copy fasta	SPIN1	chr9	88383444	88483694
SPIN1_chr9_88383444_88483694	0/0	t0017	3671	1	0	0	0	1	0	copy fasta	SPIN1	chr9	88383444	88483694
SPIN2A_chrX_57130650_57142397	1/1	t0001	315	321	74	60	148	9	28	copy fasta	SPIN2A	chrX	57130650	57142397
SPIN2A_chrX_57130650_57142397	0/0	t0002	315	5	3	2	0	0	0	copy fasta	SPIN2A	chrX	57130650	57142397
SPIN2A_chrX_57130650_57142397	0/0	t0003	315	1	1	0	0	0	0	copy fasta	SPIN2A	chrX	57130650	57142397
SPIN2A_chrX_57130650_57142397	0/0	t0004	315	1	0	0	1	0	0	copy fasta	SPIN2A	chrX	57130650	57142397
SPIN2B_chrX_57114682_57126548	1/0	t0001	485	244	74	44	99	8	18	copy fasta	SPIN2B	chrX	57114682	57126548
SPIN2B_chrX_57114682_57126548	0/1	t0002	485	73	3	17	43	3	6	copy fasta	SPIN2B	chrX	57114682	57126548
SPIN2B_chrX_57114682_57126548	0/0	t0003	485	1	0	0	0	0	1	copy fasta	SPIN2B	chrX	57114682	57126548
SPIN2B_chrX_57114682_57126548	0/0	t0004	485	1	0	0	1	0	0	copy fasta	SPIN2B	chrX	57114682	57126548
SPIN2B_chrX_57114682_57126548	0/0	t0005	485	1	0	0	0	0	1	copy fasta	SPIN2B	chrX	57114682	57126548
SPIN2B_chrX_57114682_57126548	0/0	t0006	485	1	1	0	0	0	0	copy fasta	SPIN2B	chrX	57114682	57126548
SPIN2B_chrX_57114682_57126548	0/0	t0007	485	1	0	0	1	0	0	copy fasta	SPIN2B	chrX	57114682	57126548
SPIN3_chrX_56985831_57000541	0/0	t0001	3668	148	1	26	96	10	15	copy fasta	SPIN3	chrX	56985831	57000541
SPIN3_chrX_56985831_57000541	0/1	t0002	3669	92	22	20	41	1	7	copy fasta	SPIN3	chrX	56985831	57000541
SPIN3_chrX_56985831_57000541	0/0	t0003	3667	45	36	7	0	0	2	copy fasta	SPIN3	chrX	56985831	57000541
SPIN3_chrX_56985831_57000541	0/0	t0004	3668	5	5	0	0	0	0	copy fasta	SPIN3	chrX	56985831	57000541
SPIN3_chrX_56985831_57000541	0/0	t0005	3669	5	4	1	0	0	0	copy fasta	SPIN3	chrX	56985831	57000541
SPIN3_chrX_56985831_57000541	0/0	t0006	3669	5	0	1	4	0	0	copy fasta	SPIN3	chrX	56985831	57000541
SPIN3_chrX_56985831_57000541	0/0	t0007	3670	3	0	0	3	0	0	copy fasta	SPIN3	chrX	56985831	57000541
SPIN3_chrX_56985831_57000541	1/0	t0008	3669	2	1	0	0	0	0	copy fasta	SPIN3	chrX	56985831	57000541
SPIN3_chrX_56985831_57000541	0/0	t0009	3670	1	0	0	1	0	0	copy fasta	SPIN3	chrX	56985831	57000541
SPIN3_chrX_56985831_57000541	0/0	t0010	3669	1	1	0	0	0	0	copy fasta	SPIN3	chrX	56985831	57000541
SPIN3_chrX_56985831_57000541	0/0	t0011	3669	1	0	1	0	0	0	copy fasta	SPIN3	chrX	56985831	57000541
SPIN3_chrX_56985831_57000541	0/0	t0012	3669	1	0	0	1	0	0	copy fasta	SPIN3	chrX	56985831	57000541
SPIN3_chrX_56985831_57000541	0/0	t0013	3668	1	0	0	1	0	0	copy fasta	SPIN3	chrX	56985831	57000541
SPIN3_chrX_56985831_57000541	0/0	t0014	3669	1	1	0	0	0	0	copy fasta	SPIN3	chrX	56985831	57000541
SPIN3_chrX_56985831_57000541	0/0	t0015	3668	1	0	0	1	0	0	copy fasta	SPIN3	chrX	56985831	57000541
SPIN3_chrX_56985831_57000541	0/0	t0016	3667	1	0	0	1	0	0	copy fasta	SPIN3	chrX	56985831	57000541