JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SPIN3_chrX_56985831_57000541	0/0	t0017	3666	1	1	0	0	0	0	copy fasta	SPIN3	chrX	56985831	57000541
SPIN3_chrX_56985831_57000541	0/0	t0018	3667	1	1	0	0	0	0	copy fasta	SPIN3	chrX	56985831	57000541
SPIN3_chrX_56985831_57000541	0/0	t0019	3667	1	1	0	0	0	0	copy fasta	SPIN3	chrX	56985831	57000541
SPIN3_chrX_56985831_57000541	0/0	t0020	3683	1	0	0	1	0	0	copy fasta	SPIN3	chrX	56985831	57000541
SPIN3_chrX_56985831_57000541	0/0	t0021	3668	1	0	0	1	0	0	copy fasta	SPIN3	chrX	56985831	57000541
SPIN4_chrX_63342228_63356332	1/1	t0001	3356	246	47	49	118	11	19	copy fasta	SPIN4	chrX	63342228	63356332
SPIN4_chrX_63342228_63356332	0/0	t0002	3356	17	16	1	0	0	0	copy fasta	SPIN4	chrX	63342228	63356332
SPIN4_chrX_63342228_63356332	0/0	t0003	3356	11	8	3	0	0	0	copy fasta	SPIN4	chrX	63342228	63356332
SPIN4_chrX_63342228_63356332	0/0	t0004	3356	6	5	1	0	0	0	copy fasta	SPIN4	chrX	63342228	63356332
SPIN4_chrX_63342228_63356332	0/0	t0005	3356	4	0	0	0	0	4	copy fasta	SPIN4	chrX	63342228	63356332
SPIN4_chrX_63342228_63356332	0/0	t0006	3356	4	0	3	1	0	0	copy fasta	SPIN4	chrX	63342228	63356332
SPIN4_chrX_63342228_63356332	0/0	t0007	3356	2	0	0	0	0	2	copy fasta	SPIN4	chrX	63342228	63356332
SPIN4_chrX_63342228_63356332	0/0	t0008	3356	2	2	0	0	0	0	copy fasta	SPIN4	chrX	63342228	63356332
SPIN4_chrX_63342228_63356332	0/0	t0009	3355	1	0	1	0	0	0	copy fasta	SPIN4	chrX	63342228	63356332
SPIN4_chrX_63342228_63356332	0/0	t0010	3356	1	0	0	0	0	1	copy fasta	SPIN4	chrX	63342228	63356332
SPIN4_chrX_63342228_63356332	0/0	t0011	3356	1	0	0	0	0	1	copy fasta	SPIN4	chrX	63342228	63356332
SPIN4_chrX_63342228_63356332	0/0	t0012	3356	1	0	1	0	0	0	copy fasta	SPIN4	chrX	63342228	63356332
SPIN4_chrX_63342228_63356332	0/0	t0013	3356	1	0	0	0	0	1	copy fasta	SPIN4	chrX	63342228	63356332
SPIN4_chrX_63342228_63356332	0/0	t0014	3356	1	0	1	0	0	0	copy fasta	SPIN4	chrX	63342228	63356332
SPINDOC_chr11_63808456_63832716	1/1	t0001	809	190	59	29	58	11	31	copy fasta	SPINDOC	chr11	63808456	63832716
SPINDOC_chr11_63808456_63832716	0/0	t0002	809	166	5	51	92	5	13	copy fasta	SPINDOC	chr11	63808456	63832716
SPINDOC_chr11_63808456_63832716	0/0	t0003	809	13	11	2	0	0	0	copy fasta	SPINDOC	chr11	63808456	63832716
SPINDOC_chr11_63808456_63832716	0/0	t0004	809	8	8	0	0	0	0	copy fasta	SPINDOC	chr11	63808456	63832716
SPINDOC_chr11_63808456_63832716	0/0	t0005	811	2	2	0	0	0	0	copy fasta	SPINDOC	chr11	63808456	63832716
SPINDOC_chr11_63808456_63832716	0/0	t0006	809	2	0	0	2	0	0	copy fasta	SPINDOC	chr11	63808456	63832716
SPINDOC_chr11_63808456_63832716	0/0	t0007	811	1	1	0	0	0	0	copy fasta	SPINDOC	chr11	63808456	63832716
SPINDOC_chr11_63808456_63832716	0/0	t0008	809	1	1	0	0	0	0	copy fasta	SPINDOC	chr11	63808456	63832716
SPINDOC_chr11_63808456_63832716	0/0	t0009	809	1	1	0	0	0	0	copy fasta	SPINDOC	chr11	63808456	63832716
SPINDOC_chr11_63808456_63832716	0/0	t0010	809	1	0	1	0	0	0	copy fasta	SPINDOC	chr11	63808456	63832716
SPINDOC_chr11_63808456_63832716	0/0	t0011	809	1	0	0	1	0	0	copy fasta	SPINDOC	chr11	63808456	63832716
SPINDOC_chr11_63808456_63832716	0/0	t0012	809	1	0	0	1	0	0	copy fasta	SPINDOC	chr11	63808456	63832716
SPINDOC_chr11_63808456_63832716	0/0	t0013	809	1	1	0	0	0	0	copy fasta	SPINDOC	chr11	63808456	63832716
SPINDOC_chr11_63808456_63832716	0/0	t0014	809	1	0	1	0	0	0	copy fasta	SPINDOC	chr11	63808456	63832716
SPINDOC_chr11_63808456_63832716	0/0	t0015	809	1	1	0	0	0	0	copy fasta	SPINDOC	chr11	63808456	63832716
SPINDOC_chr11_63808456_63832716	0/0	t0016	809	1	1	0	0	0	0	copy fasta	SPINDOC	chr11	63808456	63832716
SPINDOC_chr11_63808456_63832716	0/0	t0017	809	1	1	0	0	0	0	copy fasta	SPINDOC	chr11	63808456	63832716
SPINK13_chr5_148263794_148291255	1/1	t0001	336	318	65	58	150	12	31	copy fasta	SPINK13	chr5	148263794	148291255
SPINK13_chr5_148263794_148291255	0/0	t0002	336	44	17	0	26	0	1	copy fasta	SPINK13	chr5	148263794	148291255
SPINK13_chr5_148263794_148291255	0/0	t0003	332	12	10	2	0	0	0	copy fasta	SPINK13	chr5	148263794	148291255
SPINK13_chr5_148263794_148291255	0/0	t0004	336	2	2	0	0	0	0	copy fasta	SPINK13	chr5	148263794	148291255
SPINK14_chr5_148163546_148180619	1/0	t0001	316	107	12	16	72	0	6	copy fasta	SPINK14	chr5	148163546	148180619
SPINK14_chr5_148163546_148180619	0/0	t0002	316	1	1	0	0	0	0	copy fasta	SPINK14	chr5	148163546	148180619
SPINK14_chr5_148163546_148180619	0/0	t0003	316	1	1	0	0	0	0	copy fasta	SPINK14	chr5	148163546	148180619
SPINK1_chr5_147819582_147836671	1/1	t0001	174	366	76	64	169	18	37	copy fasta	SPINK1	chr5	147819582	147836671
SPINK1_chr5_147819582_147836671	0/0	t0002	174	46	4	14	23	0	5	copy fasta	SPINK1	chr5	147819582	147836671
SPINK1_chr5_147819582_147836671	0/0	t0003	174	11	11	0	0	0	0	copy fasta	SPINK1	chr5	147819582	147836671
SPINK1_chr5_147819582_147836671	0/0	t0004	174	3	3	0	0	0	0	copy fasta	SPINK1	chr5	147819582	147836671
SPINK2_chr4_56804861_56826701	1/1	t0001	318	291	60	67	116	14	32	copy fasta	SPINK2	chr4	56804861	56826701
SPINK2_chr4_56804861_56826701	0/0	t0002	318	130	27	13	76	0	14	copy fasta	SPINK2	chr4	56804861	56826701
SPINK2_chr4_56804861_56826701	0/0	t0003	318	5	5	0	0	0	0	copy fasta	SPINK2	chr4	56804861	56826701